Variant report

Variant	rs12660449
Chromosome Location	chr6:109524795-109524796
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1006081	0.84[CEU][hapmap];1.00[YRI][hapmap]
rs12191774	0.84[CEU][hapmap]
rs12201929	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12528081	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs352849	0.90[JPT][hapmap]
rs4945826	0.84[CEU][hapmap];0.84[GIH][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs4946953	0.80[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs4946956	0.84[CEU][hapmap];1.00[YRI][hapmap]
rs4946957	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs6903519	0.84[CEU][hapmap];1.00[YRI][hapmap]
rs7757193	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs884366	0.84[CEU][hapmap];0.84[GIH][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs9320282	1.00[YRI][hapmap]
rs9487053	1.00[YRI][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12660449	CD164	cis	Muscle Skeletal	GTEx
rs12660449	FYN	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109516400-109535000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr6:109517200-109544800	Weak transcription	Psoas Muscle	Psoas
3	chr6:109520400-109525200	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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