Variant report

Variant	rs4946953
Chromosome Location	chr6:109583631-109583632
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109575810..109578673-chr6:109582353..109584012,2	MCF-7	breast:
2	chr6:109578534..109581492-chr6:109583225..109585725,2	K562	blood:
3	chr6:109577168..109578931-chr6:109582878..109584392,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1006081	0.96[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11153164	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12191774	0.96[CEU][hapmap];0.83[YRI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12201929	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12660449	0.80[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs1521905	0.86[AFR][1000 genomes]
rs352849	0.80[JPT][hapmap]
rs3941888	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4945826	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4946949	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4946955	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4946956	0.96[CEU][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4946957	0.95[CEU][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4946962	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62436600	0.84[ASN][1000 genomes]
rs62436601	0.84[ASN][1000 genomes]
rs6568559	0.86[AFR][1000 genomes]
rs6568560	0.86[AFR][1000 genomes]
rs6903519	0.96[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7757193	0.80[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs7773213	0.82[AFR][1000 genomes]
rs7775206	0.82[AFR][1000 genomes]
rs884366	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9320282	1.00[YRI][hapmap]
rs9372209	0.82[AFR][1000 genomes]
rs9372210	0.82[AFR][1000 genomes]
rs9386780	0.83[YRI][hapmap]
rs9398196	0.82[AFR][1000 genomes]
rs9487053	1.00[YRI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4946953	CD164	cis	Muscle Skeletal	GTEx

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109564000-109590400	Weak transcription	Psoas Muscle	Psoas
2	chr6:109572800-109590400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:109572800-109595200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:109573200-109589800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:109573600-109590200	Weak transcription	Gastric	stomach
6	chr6:109575800-109589200	Weak transcription	Pancreas	Pancrea
7	chr6:109579600-109584200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:109581800-109583800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:109581800-109588800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr6:109582800-109584000	Enhancers	Ovary	ovary
11	chr6:109583000-109587600	Strong transcription	HepG2	liver
12	chr6:109583200-109584000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr6:109583400-109587200	Weak transcription	Adipose Nuclei	Adipose
14	chr6:109583400-109587600	Strong transcription	Placenta	Placenta
15	chr6:109583400-109590400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:109583600-109583800	Enhancers	HSMM	muscle
17	chr6:109583600-109590200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr6:109583600-109590400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr6:109583600-109591400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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