Variant report

Variant	rs4946949
Chromosome Location	chr6:109572299-109572300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11153164	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12201929	0.94[ASN][1000 genomes]
rs12528081	0.81[ASN][1000 genomes]
rs3941888	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945826	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4946953	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62436600	0.92[ASN][1000 genomes]
rs62436601	0.92[ASN][1000 genomes]
rs884366	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527657	chr6:109533385-109579675	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109562000-109572400	Weak transcription	Placenta	Placenta
2	chr6:109564000-109590400	Weak transcription	Psoas Muscle	Psoas
3	chr6:109564200-109572600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:109572000-109572400	Active TSS	Esophagus	oesophagus
5	chr6:109572000-109572600	Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr6:109572000-109572600	Active TSS	HepG2	liver
7	chr6:109572000-109572800	Active TSS	H9 Cell Line	embryonic stem cell
8	chr6:109572000-109572800	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr6:109572000-109573000	Active TSS	H1 Cell Line	embryonic stem cell
10	chr6:109572000-109573000	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr6:109572000-109573200	Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr6:109572200-109572800	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr6:109572200-109578800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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