Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:109571949..109573632-chr6:109575692..109577671,2	K562	blood:
2	chr6:109572074..109573925-chr6:109578773..109580285,2	MCF-7	breast:
3	chr6:109571576..109573317-chr6:109615382..109618742,3	MCF-7	breast:
4	chr6:109571108..109577979-chr6:109701689..109707468,12	MCF-7	breast:
5	chr6:109571834..109573964-chr6:109613756..109616504,2	MCF-7	breast:
6	chr6:109545348..109547132-chr6:109572253..109575159,2	MCF-7	breast:
7	chr6:109571423..109573781-chr6:109659713..109661931,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1006081	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11153164	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12191774	0.87[EUR][1000 genomes]
rs12201929	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12528081	0.83[ASN][1000 genomes]
rs1521905	0.80[AFR][1000 genomes]
rs4945826	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4946949	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4946953	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4946955	0.90[EUR][1000 genomes]
rs4946956	0.89[EUR][1000 genomes]
rs4946957	0.89[EUR][1000 genomes]
rs4946962	0.88[EUR][1000 genomes]
rs62436600	0.94[ASN][1000 genomes]
rs62436601	0.94[ASN][1000 genomes]
rs6568559	0.80[AFR][1000 genomes]
rs6568560	0.80[AFR][1000 genomes]
rs6903519	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6927569	0.81[AFR][1000 genomes]
rs7744284	0.81[AFR][1000 genomes]
rs7773815	0.81[AFR][1000 genomes]
rs7774377	0.83[AFR][1000 genomes]
rs7774390	0.83[AFR][1000 genomes]
rs884366	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9487053	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527657	chr6:109533385-109579675	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3941888	CD164	cis	Muscle Skeletal	GTEx

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109564000-109590400	Weak transcription	Psoas Muscle	Psoas
2	chr6:109564200-109572600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:109572000-109572600	Active TSS	iPS-18 Cell Line	embryonic stem cell
4	chr6:109572000-109572600	Active TSS	HepG2	liver
5	chr6:109572000-109572800	Active TSS	H9 Cell Line	embryonic stem cell
6	chr6:109572000-109572800	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr6:109572000-109573000	Active TSS	H1 Cell Line	embryonic stem cell
8	chr6:109572000-109573000	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr6:109572000-109573200	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr6:109572200-109572800	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr6:109572200-109578800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:109572400-109572600	Active TSS	Placenta	Placenta
13	chr6:109572400-109572800	Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr6:109572400-109572800	Active TSS	A549	lung
15	chr6:109572400-109573000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
16	chr6:109572400-109573200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:109572400-109577600	Enhancers	Adipose Nuclei	Adipose

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