Variant report

Variant	rs11153164
Chromosome Location	chr6:109596309-109596310
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1006081	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12191774	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12201929	0.84[ASN][1000 genomes]
rs3941888	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4945826	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945829	0.81[EUR][1000 genomes]
rs4946949	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4946953	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4946954	0.80[EUR][1000 genomes]
rs4946955	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4946956	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4946957	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4946962	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62436600	0.82[ASN][1000 genomes]
rs62436601	0.82[ASN][1000 genomes]
rs6903519	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs884366	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11153164	CD164	cis	Muscle Skeletal	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109587600-109614600	Weak transcription	HepG2	liver
2	chr6:109591600-109615200	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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