Variant report

Variant	rs12201929
Chromosome Location	chr6:109567248-109567249
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11153164	0.84[ASN][1000 genomes]
rs12528081	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12660449	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3941888	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945826	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4946949	0.94[ASN][1000 genomes]
rs4946953	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62436600	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62436601	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7757193	0.81[EUR][1000 genomes]
rs884366	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527657	chr6:109533385-109579675	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109558200-109572200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:109562000-109572400	Weak transcription	Placenta	Placenta
3	chr6:109564000-109590400	Weak transcription	Psoas Muscle	Psoas
4	chr6:109564200-109572600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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