Variant report

Variant	rs352849
Chromosome Location	chr6:109504086-109504087
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109503045..109504923-chr6:109532588..109535516,2	MCF-7	breast:
2	chr6:109503627..109504613-chr6:109766403..109766938,2	MCF-7	breast:
3	chr6:109502825..109510460-chr6:109701859..109705678,15	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135535	Chromatin interaction
ENSG00000260273	Chromatin interaction

rs_ID	r²[population]
rs12660449	0.90[JPT][hapmap]
rs164759	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4945826	0.80[JPT][hapmap]
rs4946953	0.80[JPT][hapmap]
rs7757193	0.85[JPT][hapmap]
rs884366	0.80[JPT][hapmap]

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109502000-109506200	Enhancers	Fetal Muscle Leg	muscle
2	chr6:109503000-109504600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:109503200-109504200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:109503400-109504600	Enhancers	Adipose Nuclei	Adipose
5	chr6:109503400-109504600	Flanking Active TSS	HSMMtube	muscle
6	chr6:109503400-109505000	Enhancers	HSMM	muscle
7	chr6:109503600-109504200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:109503600-109504400	Enhancers	Fetal Lung	lung
9	chr6:109503600-109504800	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
10	chr6:109503800-109504200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:109503800-109504200	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:109503800-109504200	Enhancers	Liver	Liver
13	chr6:109503800-109504200	Flanking Active TSS	Brain Substantia Nigra	brain
14	chr6:109503800-109504200	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr6:109503800-109504400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:109503800-109504600	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr6:109503800-109505000	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr6:109503800-109505200	Enhancers	Stomach Mucosa	stomach
19	chr6:109503800-109505400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr6:109503800-109505800	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr6:109504000-109504200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr6:109504000-109504200	Enhancers	Brain Angular Gyrus	brain
23	chr6:109504000-109504200	Active TSS	Brain Hippocampus Middle	brain
24	chr6:109504000-109504200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
25	chr6:109504000-109504200	Enhancers	Fetal Heart	heart
26	chr6:109504000-109504400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:109504000-109504400	Enhancers	Pancreatic Islets	Pancreatic Islet
28	chr6:109504000-109504600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:109504000-109505800	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr6:109504000-109506000	Enhancers	HUES6 Cell Line	embryonic stem cell

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