Variant report

Variant	rs6902892
Chromosome Location	chr6:109627601-109627602
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:109623091..109628183-chr6:109700606..109706462,9	K562	blood:
2	chr6:109627149..109629191-chr6:109642784..109645963,3	K562	blood:
3	chr6:109627149..109629191-chr6:109643019..109645963,3	K562	blood:
4	chr6:109555640..109560553-chr6:109624000..109628580,4	K562	blood:
5	chr6:109624816..109627658-chr6:109659263..109661556,2	K562	blood:
6	chr6:109624351..109631970-chr6:109702157..109706422,11	K562	blood:
7	chr6:109626552..109629448-chr6:109691931..109694820,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000260273	Chromatin interaction
ENSG00000203799	Chromatin interaction
ENSG00000243587	Chromatin interaction
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 112 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs1111863	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1111864	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1111865	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1111866	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13195816	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1320612	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13209277	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13210424	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13210693	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1521905	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1521908	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1546722	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1608041	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1608042	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1608044	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1829694	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1832777	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1915834	0.83[EUR][1000 genomes]
rs1915835	0.83[EUR][1000 genomes]
rs2222392	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2356817	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2884012	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2884013	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4383852	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4403290	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4406271	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4601178	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945826	1.00[LWK][hapmap]
rs4946956	0.80[MEX][hapmap]
rs5012479	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6568558	0.83[EUR][1000 genomes]
rs6568559	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6568560	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6568561	0.83[EUR][1000 genomes]
rs6568564	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6568566	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6568567	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6568568	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6903107	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6903519	0.80[MEX][hapmap]
rs6903695	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910119	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6910696	0.83[EUR][1000 genomes]
rs6913093	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924776	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6924815	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6925716	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6927569	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6928622	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6929438	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6930733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932503	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6933326	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7744284	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7748641	0.82[EUR][1000 genomes]
rs7753697	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7753705	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7755970	1.00[CEU][hapmap];0.84[GIH][hapmap];0.90[LWK][hapmap];0.96[MEX][hapmap];0.80[MKK][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7757347	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772602	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7773213	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7773331	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7773775	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7773815	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7774377	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7774390	1.00[CEU][hapmap];0.84[GIH][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.80[MKK][hapmap];0.95[TSI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7775206	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs882072	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs882074	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs884366	1.00[LWK][hapmap]
rs9320282	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs932223	0.81[TSI][hapmap];0.84[EUR][1000 genomes]
rs9372208	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9372209	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9372210	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9372211	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9374077	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9374079	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9386780	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9386787	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9386788	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9386789	0.84[EUR][1000 genomes]
rs9386790	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9386791	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9386792	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9386793	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9386794	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9386797	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398193	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9398196	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9398197	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9400266	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9400267	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9400268	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9400269	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9400270	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9400271	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9480921	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap]
rs9480922	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9480923	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9487032	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9487033	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9487034	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.83[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9487036	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9487038	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9487039	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9487042	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9487043	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9487053	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9487058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9784763	0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527719	chr6:109624937-109631609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs6902892	GSTM2P1	cis	parietal	SCAN
rs6902892	PPIL6	cis	parietal	SCAN
rs6902892	ATG5	cis	cerebellum	SCAN
rs6902892	CD164	cis	parietal	SCAN
rs6902892	KHDRBS1	trans	cerebellum	SCAN

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109619400-109629200	Weak transcription	Gastric	stomach
2	chr6:109619400-109638000	Weak transcription	HepG2	liver
3	chr6:109621400-109629600	Enhancers	Primary hematopoietic stem cells	blood
4	chr6:109621600-109634000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:109623600-109629400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:109624600-109631000	Enhancers	Fetal Intestine Small	intestine
7	chr6:109624800-109628200	Enhancers	Fetal Thymus	thymus
8	chr6:109624800-109629000	Enhancers	Duodenum Mucosa	Duodenum
9	chr6:109625200-109628200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:109625600-109628200	Weak transcription	Aorta	Aorta
11	chr6:109625800-109628400	Weak transcription	NHDF-Ad	bronchial
12	chr6:109625800-109629400	Weak transcription	HSMM	muscle
13	chr6:109625800-109634200	Weak transcription	Fetal Muscle Leg	muscle
14	chr6:109626000-109628000	Weak transcription	Hela-S3	cervix
15	chr6:109626000-109628400	Weak transcription	Colonic Mucosa	Colon
16	chr6:109626000-109629000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:109626200-109628600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:109626200-109629200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr6:109626200-109629200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:109626200-109629200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:109626200-109629200	Weak transcription	Right Atrium	heart
22	chr6:109626200-109629400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:109626200-109629600	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr6:109626200-109631800	Weak transcription	Placenta	Placenta
25	chr6:109626200-109634200	Weak transcription	Psoas Muscle	Psoas
26	chr6:109626200-109638800	Weak transcription	Thymus	Thymus
27	chr6:109626400-109628000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:109626400-109628400	Weak transcription	Stomach Mucosa	stomach
29	chr6:109626400-109629200	Enhancers	K562	blood
30	chr6:109627000-109627800	Enhancers	Pancreatic Islets	Pancreatic Islet
31	chr6:109627000-109628000	Weak transcription	Pancreas	Pancrea
32	chr6:109627000-109628000	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr6:109627000-109629200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:109627000-109629200	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr6:109627000-109630800	Enhancers	Fetal Intestine Large	intestine
36	chr6:109627200-109629200	Weak transcription	Adipose Nuclei	Adipose
37	chr6:109627200-109629200	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr6:109627400-109627800	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr6:109627400-109629200	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr6:109627600-109627800	Enhancers	Fetal Heart	heart
41	chr6:109627600-109630800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr6:109627600-109639000	Weak transcription	Left Ventricle	heart

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