Variant report

Variant	rs9784763
Chromosome Location	chr6:109624937-109624938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:20)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:20 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr6:109624828-109626301	K562	blood:	n/a	n/a
2	SIN3AK20	chr6:109624913-109625817	MCF-7	breast:	n/a	n/a
3	EP300	chr6:109624869-109626613	K562	blood:	n/a	chr6:109624963-109624973
4	MYC	chr6:109624868-109626229	K562	blood:	n/a	n/a
5	GATA3	chr6:109624872-109625799	MCF-7	breast:	n/a	chr6:109625249-109625265 chr6:109625251-109625258
6	TRIM28	chr6:109624749-109626180	K562	blood:	n/a	n/a
7	RCOR1	chr6:109624924-109626269	K562	blood:	n/a	n/a
8	TCF7L2	chr6:109624758-109625153	Hela-S3	cervix:	n/a	n/a
9	MAZ	chr6:109624869-109626317	K562	blood:	n/a	n/a
10	TEAD4	chr6:109624855-109626276	K562	blood:	n/a	n/a
11	TEAD4	chr6:109624744-109626315	K562	blood:	n/a	n/a
12	CBX3	chr6:109624641-109626455	K562	blood:	n/a	n/a
13	NR2F2	chr6:109624855-109626397	K562	blood:	n/a	n/a
14	MAX	chr6:109624918-109626176	K562	blood:	n/a	n/a
15	GATA1	chr6:109624821-109626516	K562	blood:	n/a	chr6:109625249-109625265 chr6:109625251-109625258
16	TBL1XR1	chr6:109624864-109626236	K562	blood:	n/a	n/a
17	UBTF	chr6:109624933-109626221	K562	blood:	n/a	n/a
18	ZNF143	chr6:109624903-109626117	K562	blood:	n/a	n/a
19	MAX	chr6:109624805-109626283	K562	blood:	n/a	n/a
20	RCOR1	chr6:109624810-109626312	K562	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:109623091..109628183-chr6:109700606..109706462,9	K562	blood:
2	chr6:109555640..109560553-chr6:109624000..109628580,4	K562	blood:
3	chr6:109623746..109625263-chr6:109628123..109630735,2	K562	blood:
4	chr6:109622184..109625668-chr6:109702158..109705094,3	MCF-7	breast:
5	chr6:109619154..109621765-chr6:109622186..109624973,2	MCF-7	breast:
6	chr6:109624816..109627658-chr6:109659263..109661556,2	K562	blood:
7	chr6:109624351..109631970-chr6:109702157..109706422,11	K562	blood:

No data

Variant related genes	Relation type
ENSG00000201023	TF binding region
ENSG00000243587	Chromatin interaction
ENSG00000260273	Chromatin interaction
ENSG00000135535	Chromatin interaction
ENSG00000203799	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs1111863	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1111864	0.96[ASN][1000 genomes]
rs1111865	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[ASN][1000 genomes]
rs1111866	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[ASN][1000 genomes]
rs1320612	0.96[ASN][1000 genomes]
rs13209277	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.94[ASN][1000 genomes]
rs1521908	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1546722	0.87[ASN][1000 genomes]
rs1832777	0.84[ASN][1000 genomes]
rs2356817	0.92[ASN][1000 genomes]
rs34981677	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4403290	0.96[ASN][1000 genomes]
rs4427037	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4601178	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[ASN][1000 genomes]
rs5012479	0.94[ASN][1000 genomes]
rs6899616	0.81[EUR][1000 genomes]
rs6902892	0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6903695	0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6913093	0.94[ASN][1000 genomes]
rs6924776	0.96[ASN][1000 genomes]
rs6924815	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[ASN][1000 genomes]
rs6927569	0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6930526	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6930693	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6930698	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6930733	0.94[ASN][1000 genomes]
rs6930844	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6932503	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7744284	0.92[ASN][1000 genomes]
rs7755970	0.82[CEU][hapmap]
rs7757347	0.94[ASN][1000 genomes]
rs7772602	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7773331	0.96[ASN][1000 genomes]
rs7774390	0.82[CEU][hapmap]
rs882072	0.96[ASN][1000 genomes]
rs882074	0.96[ASN][1000 genomes]
rs9320282	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9372205	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9372211	0.96[ASN][1000 genomes]
rs9374069	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9374070	0.81[MEX][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9374071	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9374072	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9374079	0.96[ASN][1000 genomes]
rs9384703	0.81[MEX][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9384704	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9384705	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9384706	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9386781	0.81[EUR][1000 genomes]
rs9386784	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9386790	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[ASN][1000 genomes]
rs9386791	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.96[ASN][1000 genomes]
rs9386792	0.96[ASN][1000 genomes]
rs9386793	0.96[ASN][1000 genomes]
rs9386794	0.96[ASN][1000 genomes]
rs9386797	0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9398191	0.81[MEX][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9398192	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9398197	0.96[ASN][1000 genomes]
rs9400262	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9400269	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[ASN][1000 genomes]
rs9400270	0.96[ASN][1000 genomes]
rs9400271	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[ASN][1000 genomes]
rs9480921	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs9480922	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.96[ASN][1000 genomes]
rs9480923	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9487020	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9487032	0.88[ASN][1000 genomes]
rs9487033	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9487034	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[ASN][1000 genomes]
rs9487036	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9487038	0.96[ASN][1000 genomes]
rs9487039	0.96[ASN][1000 genomes]
rs9487042	0.96[ASN][1000 genomes]
rs9487043	0.95[ASN][1000 genomes]
rs9487053	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs9487058	0.94[ASN][1000 genomes]
rs949881	0.81[MEX][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs949882	0.81[MEX][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527719	chr6:109624937-109631609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9784763	ATG5	cis	cerebellum	SCAN
rs9784763	GSTM2P1	cis	parietal	SCAN

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109619200-109625800	Weak transcription	Brain Angular Gyrus	brain
2	chr6:109619200-109626800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:109619400-109625000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:109619400-109629200	Weak transcription	Gastric	stomach
5	chr6:109619400-109638000	Weak transcription	HepG2	liver
6	chr6:109619600-109625200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:109619600-109625400	Enhancers	Stomach Smooth Muscle	stomach
8	chr6:109619600-109625600	Weak transcription	Lung	lung
9	chr6:109619600-109626000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:109620000-109625000	Weak transcription	Primary B cells from cord blood	blood
11	chr6:109621400-109629600	Enhancers	Primary hematopoietic stem cells	blood
12	chr6:109621600-109625200	Weak transcription	Spleen	Spleen
13	chr6:109621600-109625600	Weak transcription	Right Atrium	heart
14	chr6:109621600-109634000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr6:109621800-109625000	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr6:109621800-109625200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:109622000-109625800	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr6:109622400-109625200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:109622400-109626200	Enhancers	Placenta	Placenta
20	chr6:109623000-109625000	Weak transcription	Brain Substantia Nigra	brain
21	chr6:109623000-109625400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr6:109623000-109625600	Weak transcription	Adipose Nuclei	Adipose
23	chr6:109623200-109625000	Weak transcription	Psoas Muscle	Psoas
24	chr6:109623200-109625400	Weak transcription	Brain Anterior Caudate	brain
25	chr6:109623200-109625800	Weak transcription	Brain Hippocampus Middle	brain
26	chr6:109623400-109625000	Weak transcription	Right Ventricle	heart
27	chr6:109623400-109625000	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr6:109623400-109625000	Weak transcription	Small Intestine	intestine
29	chr6:109623400-109625200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr6:109623400-109625200	Weak transcription	Colon Smooth Muscle	Colon
31	chr6:109623400-109625200	Weak transcription	Fetal Heart	heart
32	chr6:109623400-109625400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:109623600-109625000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr6:109623600-109625000	Weak transcription	Left Ventricle	heart
35	chr6:109623600-109625000	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr6:109623600-109625200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr6:109623600-109625400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:109623600-109629400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr6:109624000-109627000	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr6:109624400-109626000	Enhancers	Hela-S3	cervix
41	chr6:109624400-109626400	Flanking Active TSS	K562	blood
42	chr6:109624400-109626600	Enhancers	Rectal Mucosa Donor 31	rectum
43	chr6:109624600-109625600	Enhancers	Aorta	Aorta
44	chr6:109624600-109626200	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr6:109624600-109626400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr6:109624600-109626400	Enhancers	Primary monocytes fromperipheralblood	blood
47	chr6:109624600-109626400	Enhancers	Pancreas	Pancrea
48	chr6:109624600-109626600	Enhancers	Fetal Intestine Large	intestine
49	chr6:109624600-109631000	Enhancers	Fetal Intestine Small	intestine
50	chr6:109624800-109625400	Enhancers	Rectal Mucosa Donor 29	rectum

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