Variant report

Variant	rs9487020
Chromosome Location	chr6:109587672-109587673
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109586028..109588133-chr6:109739017..109740783,2	K562	blood:
2	chr6:109580166..109583539-chr6:109585250..109587755,3	MCF-7	breast:
3	chr6:109586422..109588540-chr6:109591361..109594071,2	MCF-7	breast:
4	chr6:109572844..109579013-chr6:109586013..109590515,6	MCF-7	breast:
5	chr6:109586366..109589239-chr6:109589741..109593458,3	K562	blood:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs13195816	0.94[ASN][1000 genomes]
rs13210424	0.94[ASN][1000 genomes]
rs13210693	0.93[ASN][1000 genomes]
rs1521905	0.94[ASN][1000 genomes]
rs1608041	0.94[ASN][1000 genomes]
rs1608042	0.94[ASN][1000 genomes]
rs1608044	0.94[ASN][1000 genomes]
rs1829694	0.94[ASN][1000 genomes]
rs1915834	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1915835	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2222392	0.92[ASN][1000 genomes]
rs2884012	0.94[ASN][1000 genomes]
rs2884013	0.93[ASN][1000 genomes]
rs34981677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35492211	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4383852	0.94[ASN][1000 genomes]
rs4406271	0.94[ASN][1000 genomes]
rs4427037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6568558	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6568559	0.94[ASN][1000 genomes]
rs6568560	0.93[ASN][1000 genomes]
rs6568561	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6568564	0.94[ASN][1000 genomes]
rs6568566	0.94[ASN][1000 genomes]
rs6568567	0.93[ASN][1000 genomes]
rs6568568	0.94[ASN][1000 genomes]
rs6899616	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6903107	0.94[ASN][1000 genomes]
rs6910119	0.93[ASN][1000 genomes]
rs6910696	0.97[ASN][1000 genomes]
rs6925716	0.94[ASN][1000 genomes]
rs6928622	0.94[ASN][1000 genomes]
rs6929438	0.93[ASN][1000 genomes]
rs6930526	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6930693	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6930698	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6930844	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933326	0.93[ASN][1000 genomes]
rs7748641	0.97[ASN][1000 genomes]
rs7753697	0.93[ASN][1000 genomes]
rs7753705	0.93[ASN][1000 genomes]
rs7755970	0.90[ASN][1000 genomes]
rs7765166	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7773213	0.93[ASN][1000 genomes]
rs7773775	0.93[ASN][1000 genomes]
rs7773815	0.90[ASN][1000 genomes]
rs7774377	0.93[ASN][1000 genomes]
rs7774390	0.93[ASN][1000 genomes]
rs7775206	0.94[ASN][1000 genomes]
rs932223	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9372205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9372208	0.94[ASN][1000 genomes]
rs9372209	0.93[ASN][1000 genomes]
rs9372210	0.93[ASN][1000 genomes]
rs9374069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9374070	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9374071	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9374072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374077	0.93[ASN][1000 genomes]
rs9384703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9384704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9384706	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9386780	0.90[ASN][1000 genomes]
rs9386781	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9386783	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9386784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386787	0.92[ASN][1000 genomes]
rs9386788	0.93[ASN][1000 genomes]
rs9386789	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9398191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9398192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398193	0.93[ASN][1000 genomes]
rs9398196	0.93[ASN][1000 genomes]
rs9400262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400266	0.94[ASN][1000 genomes]
rs9400267	0.93[ASN][1000 genomes]
rs9400268	0.93[ASN][1000 genomes]
rs949881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs949882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9784763	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv999906	chr6:109584769-109588060	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109564000-109590400	Weak transcription	Psoas Muscle	Psoas
2	chr6:109572800-109590400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:109572800-109595200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:109573200-109589800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:109573600-109590200	Weak transcription	Gastric	stomach
6	chr6:109575800-109589200	Weak transcription	Pancreas	Pancrea
7	chr6:109581800-109588800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:109583400-109590400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:109583600-109590200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr6:109583600-109590400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr6:109583600-109591400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:109583800-109590400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:109587600-109590200	Weak transcription	Placenta	Placenta
14	chr6:109587600-109614600	Weak transcription	HepG2	liver

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