Variant report

Variant	rs9487034
Chromosome Location	chr6:109605899-109605900
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr6:109605743-109606280	K562	blood:	n/a	n/a
2	TEAD4	chr6:109605737-109606491	K562	blood:	n/a	n/a
3	CEBPB	chr6:109605873-109606216	K562	blood:	n/a	n/a
4	TAL1	chr6:109605853-109606536	K562	blood:	n/a	chr6:109606146-109606161 chr6:109606127-109606142 chr6:109606127-109606142 chr6:109606128-109606139 chr6:109606146-109606161 chr6:109606127-109606142 chr6:109606147-109606158 chr6:109606130-109606141
5	GATA2	chr6:109605839-109606359	K562	blood:	n/a	n/a
6	GABPA	chr6:109605862-109606314	K562	blood:	n/a	n/a
7	PML	chr6:109605775-109606368	K562	blood:	n/a	n/a
8	TRIM28	chr6:109605806-109606324	K562	blood:	n/a	n/a
9	JUND	chr6:109605824-109606168	K562	blood:	n/a	n/a
10	CEBPD	chr6:109605806-109606409	K562	blood:	n/a	n/a
11	RCOR1	chr6:109605892-109606248	K562	blood:	n/a	n/a
12	GATA2	chr6:109605870-109606238	K562	blood:	n/a	n/a
13	STAT5A	chr6:109605855-109606369	K562	blood:	n/a	n/a
14	PML	chr6:109605783-109606368	K562	blood:	n/a	n/a
15	POLR2A	chr6:109605809-109606299	K562	blood:	n/a	n/a
16	CEBPD	chr6:109605819-109606257	K562	blood:	n/a	n/a
17	TEAD4	chr6:109605756-109606398	K562	blood:	n/a	n/a
18	EP300	chr6:109605882-109606313	K562	blood:	n/a	n/a
19	STAT5A	chr6:109605840-109606294	K562	blood:	n/a	n/a
20	GATA1	chr6:109605700-109607272	K562	blood:	n/a	chr6:109606576-109606583 chr6:109607076-109607086
21	NR2F2	chr6:109605833-109606306	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:109604174..109607113-chr6:109618128..109619634,2	MCF-7	breast:
2	chr6:109604152..109606208-chr6:109703363..109705776,2	K562	blood:
3	chr6:109604925..109606783-chr6:109700992..109703357,2	K562	blood:
4	chr6:109596645..109598762-chr6:109604228..109605955,2	K562	blood:
5	chr6:109605714..109609020-chr6:109609558..109612279,3	K562	blood:
6	chr6:109604413..109609020-chr6:109610779..109613527,4	K562	blood:
7	chr6:109604277..109607787-chr6:109628110..109631936,3	K562	blood:

Variant related genes	Relation type
ENSG00000233908	TF binding region
ENSG00000233908	Chromatin interaction
ENSG00000203799	Chromatin interaction
ENSG00000219700	Chromatin interaction
ENSG00000260273	Chromatin interaction
ENSG00000135535	Chromatin interaction
ENSG00000238474	Chromatin interaction

Extended variants
information (count: 131 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:131)

rs_ID	r²[population]
rs1008084	0.88[CEU][hapmap]
rs1111863	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.88[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1111864	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1111865	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1111866	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1260595	0.80[CEU][hapmap]
rs13195816	0.84[EUR][1000 genomes]
rs1320612	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13209277	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13210424	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13210693	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1341271	0.88[CEU][hapmap]
rs1341272	0.80[CEU][hapmap]
rs1521905	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1521908	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1546722	0.89[ASN][1000 genomes]
rs1608041	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1608042	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1608044	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1741930	0.81[CEU][hapmap]
rs1761608	0.80[CEU][hapmap]
rs1829694	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1832777	0.86[ASN][1000 genomes]
rs1915834	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1915835	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2222392	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2356817	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2884012	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2884013	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs368467	0.81[CEU][hapmap]
rs396000	0.81[CEU][hapmap]
rs419106	0.81[CEU][hapmap]
rs4383852	0.83[EUR][1000 genomes]
rs4403290	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4406271	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4601178	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5012479	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6568558	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6568559	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6568560	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6568561	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6568564	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6568566	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6568567	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6568568	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6568571	0.84[CEU][hapmap]
rs6902892	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.83[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6903107	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6903695	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.83[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6910119	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6910696	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6913093	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6924776	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924815	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925716	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6927569	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6928622	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6929438	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6930733	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6932503	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933326	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7744284	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7748641	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7748918	0.88[CEU][hapmap]
rs7753697	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7753705	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7755970	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7757347	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7772602	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773213	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7773331	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7773775	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7773815	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7774377	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7774390	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7775206	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs882072	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs882074	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9320282	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs932223	0.94[ASW][hapmap];0.96[CEU][hapmap];0.97[GIH][hapmap];0.91[LWK][hapmap];0.87[MEX][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9372208	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9372209	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9372210	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9372211	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374070	0.82[LWK][hapmap]
rs9374077	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9374079	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374080	0.88[CEU][hapmap]
rs9384703	0.82[LWK][hapmap]
rs9384704	0.82[LWK][hapmap]
rs9386780	0.82[EUR][1000 genomes]
rs9386781	0.81[CEU][hapmap]
rs9386784	0.82[LWK][hapmap]
rs9386787	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9386788	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9386789	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9386790	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386791	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386792	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386793	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386794	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386796	0.88[CEU][hapmap]
rs9386797	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.83[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9398191	0.82[LWK][hapmap]
rs9398193	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9398196	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9398197	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400266	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9400267	0.83[EUR][1000 genomes]
rs9400268	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9400269	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400270	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400272	0.88[CEU][hapmap]
rs9400273	0.88[CEU][hapmap]
rs9480921	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs9480922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480923	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487032	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9487033	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.96[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487036	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487038	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487039	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487042	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487043	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9487048	0.88[CEU][hapmap]
rs9487053	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9487058	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs949881	0.82[LWK][hapmap]
rs949882	0.82[LWK][hapmap]
rs9784763	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9487034	KHDRBS1	trans	cerebellum	SCAN
rs9487034	ATG5	cis	cerebellum	SCAN
rs9487034	CD164	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109587600-109614600	Weak transcription	HepG2	liver
2	chr6:109591600-109615200	Weak transcription	Placenta	Placenta
3	chr6:109603400-109606200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:109605200-109607000	Enhancers	K562	blood
5	chr6:109605400-109606000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:109605400-109606200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:109605800-109606200	Enhancers	Primary hematopoietic stem cells	blood

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