Variant report

Variant	rs1761608
Chromosome Location	chr6:109517706-109517707
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109516242..109517758-chr6:109703015..109704701,2	MCF-7	breast:
2	chr6:109507707..109509211-chr6:109516362..109517988,2	MCF-7	breast:
3	chr6:109499131..109502034-chr6:109516260..109518298,2	K562	blood:
4	chr6:109517222..109519180-chr6:109707753..109709396,2	MCF-7	breast:
5	chr6:109516192..109517887-chr6:109702550..109704528,2	K562	blood:

Variant related genes	Relation type
ENSG00000260273	Chromatin interaction
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10447414	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1111863	0.80[CEU][hapmap]
rs1111865	0.80[CEU][hapmap]
rs1111866	0.80[CEU][hapmap]
rs1146246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12176068	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1260593	0.83[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1260594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1260595	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1260596	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1269172	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1271697	0.83[EUR][1000 genomes]
rs13196590	0.84[CEU][hapmap]
rs1341272	0.85[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1521908	0.80[CEU][hapmap]
rs171272	0.83[EUR][1000 genomes]
rs173288	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1741921	0.82[EUR][1000 genomes]
rs1741930	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1766814	0.83[EUR][1000 genomes]
rs2483913	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34527629	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs351724	0.92[CEU][hapmap];0.86[YRI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs351725	0.92[CEU][hapmap];0.85[YRI][hapmap];0.86[EUR][1000 genomes]
rs351728	0.92[CEU][hapmap]
rs351742	0.84[CEU][hapmap];0.82[GIH][hapmap];0.83[EUR][1000 genomes]
rs351743	0.82[EUR][1000 genomes]
rs351745	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs351748	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs351749	0.83[EUR][1000 genomes]
rs351752	0.83[EUR][1000 genomes]
rs351754	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs351755	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs351756	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs352837	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs368467	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs371960	0.84[CEU][hapmap];0.81[GIH][hapmap];0.83[EUR][1000 genomes]
rs378447	0.83[EUR][1000 genomes]
rs380774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs381565	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs386696	0.84[CEU][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs392820	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs396000	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs398944	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs399561	0.84[CEU][hapmap];0.82[GIH][hapmap];0.83[EUR][1000 genomes]
rs419106	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs419998	0.82[EUR][1000 genomes]
rs427960	0.84[CEU][hapmap];0.82[GIH][hapmap];0.83[EUR][1000 genomes]
rs435090	0.81[AMR][1000 genomes]
rs435611	0.83[EUR][1000 genomes]
rs437779	0.84[EUR][1000 genomes]
rs440849	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs442405	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs4427037	0.85[JPT][hapmap]
rs445796	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs449850	0.84[CEU][hapmap];0.82[GIH][hapmap];0.83[EUR][1000 genomes]
rs455839	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs458185	0.84[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs458740	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs459956	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs4601178	0.80[CEU][hapmap]
rs461487	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs463503	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs463916	0.84[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs670414	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6903107	0.86[JPT][hapmap]
rs6919423	0.92[CEU][hapmap]
rs6924815	0.83[CEU][hapmap]
rs7755970	0.86[JPT][hapmap]
rs7772602	0.80[CEU][hapmap]
rs7774390	0.85[JPT][hapmap]
rs932223	0.86[JPT][hapmap]
rs9374069	0.85[JPT][hapmap]
rs9374070	0.86[JPT][hapmap]
rs9374071	0.86[JPT][hapmap]
rs9374072	0.86[JPT][hapmap]
rs9384703	0.86[JPT][hapmap]
rs9384704	0.86[JPT][hapmap]
rs9386780	0.86[JPT][hapmap]
rs9386781	0.85[JPT][hapmap]
rs9386784	0.86[JPT][hapmap]
rs9386790	0.80[CEU][hapmap]
rs9398188	0.83[EUR][1000 genomes]
rs9398191	0.86[JPT][hapmap]
rs9398192	0.86[JPT][hapmap]
rs9400269	0.80[CEU][hapmap]
rs9480910	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9480921	0.80[CEU][hapmap]
rs9480923	0.80[CEU][hapmap]
rs9487003	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487033	0.80[CEU][hapmap]
rs9487034	0.80[CEU][hapmap]
rs949881	0.86[JPT][hapmap]
rs949882	0.86[JPT][hapmap]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109516400-109517800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:109516400-109535000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:109516600-109517800	Weak transcription	Liver	Liver
4	chr6:109516600-109517800	Weak transcription	Fetal Intestine Large	intestine
5	chr6:109516600-109517800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:109516600-109517800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:109516600-109518200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:109516800-109518000	Weak transcription	Stomach Mucosa	stomach
9	chr6:109516800-109518400	Weak transcription	Pancreas	Pancrea
10	chr6:109517000-109518000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:109517200-109544800	Weak transcription	Psoas Muscle	Psoas
12	chr6:109517600-109518400	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr6:109517600-109518600	Enhancers	HepG2	liver

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