Variant report

Variant	rs34527629
Chromosome Location	chr6:109517529-109517530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109515007..109517664-chr6:109549539..109552383,3	MCF-7	breast:
2	chr6:109516242..109517758-chr6:109703015..109704701,2	MCF-7	breast:
3	chr6:109507707..109509211-chr6:109516362..109517988,2	MCF-7	breast:
4	chr6:109499131..109502034-chr6:109516260..109518298,2	K562	blood:
5	chr6:109517222..109519180-chr6:109707753..109709396,2	MCF-7	breast:
6	chr6:109516192..109517887-chr6:109702550..109704528,2	K562	blood:

Variant related genes	Relation type
ENSG00000260273	Chromatin interaction
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10447414	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1146246	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12176068	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1260593	0.83[EUR][1000 genomes]
rs1260594	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1260595	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1260596	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1269172	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1271697	0.81[EUR][1000 genomes]
rs1341272	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs171272	0.81[EUR][1000 genomes]
rs173288	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1741921	0.80[EUR][1000 genomes]
rs1741930	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1761608	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1766814	0.81[EUR][1000 genomes]
rs2483913	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs351724	0.84[EUR][1000 genomes]
rs351725	0.84[EUR][1000 genomes]
rs351742	0.81[EUR][1000 genomes]
rs351745	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs351748	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs351749	0.81[EUR][1000 genomes]
rs351752	0.81[EUR][1000 genomes]
rs351754	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs351755	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs351756	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs352837	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs368467	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs371960	0.81[EUR][1000 genomes]
rs378447	0.81[EUR][1000 genomes]
rs380774	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs381565	0.81[EUR][1000 genomes]
rs386696	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs396000	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs398944	0.81[EUR][1000 genomes]
rs399561	0.81[EUR][1000 genomes]
rs419106	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs427960	0.81[EUR][1000 genomes]
rs435611	0.81[EUR][1000 genomes]
rs437779	0.83[EUR][1000 genomes]
rs440849	0.80[EUR][1000 genomes]
rs442405	0.81[EUR][1000 genomes]
rs445796	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs449850	0.81[EUR][1000 genomes]
rs455839	0.81[EUR][1000 genomes]
rs458185	0.81[EUR][1000 genomes]
rs458740	0.81[EUR][1000 genomes]
rs459956	0.81[EUR][1000 genomes]
rs461487	0.81[EUR][1000 genomes]
rs463503	0.81[EUR][1000 genomes]
rs463916	0.83[EUR][1000 genomes]
rs670414	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9398188	0.81[EUR][1000 genomes]
rs9480910	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9487003	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109516400-109517600	Weak transcription	HepG2	liver
2	chr6:109516400-109517800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:109516400-109535000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:109516600-109517800	Weak transcription	Liver	Liver
5	chr6:109516600-109517800	Weak transcription	Fetal Intestine Large	intestine
6	chr6:109516600-109517800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:109516600-109517800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:109516600-109518200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:109516800-109517600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr6:109516800-109518000	Weak transcription	Stomach Mucosa	stomach
11	chr6:109516800-109518400	Weak transcription	Pancreas	Pancrea
12	chr6:109517000-109518000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr6:109517200-109544800	Weak transcription	Psoas Muscle	Psoas

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