Variant report

Variant	rs9487003
Chromosome Location	chr6:109515666-109515667
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109515007..109517664-chr6:109549539..109552383,3	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10447414	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1146246	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12176068	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1260593	0.83[EUR][1000 genomes]
rs1260594	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1260595	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1260596	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1269172	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1271697	0.81[EUR][1000 genomes]
rs1341272	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs171272	0.81[EUR][1000 genomes]
rs173288	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1741930	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1761608	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1766814	0.80[EUR][1000 genomes]
rs2483913	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34527629	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs351724	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs351725	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs351742	0.81[EUR][1000 genomes]
rs351745	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs351748	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs351749	0.81[EUR][1000 genomes]
rs351752	0.81[EUR][1000 genomes]
rs351754	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs351755	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs351756	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs352837	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs368467	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs371960	0.81[EUR][1000 genomes]
rs378447	0.81[EUR][1000 genomes]
rs380774	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs381565	0.81[EUR][1000 genomes]
rs386696	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs396000	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs398944	0.80[EUR][1000 genomes]
rs399561	0.81[EUR][1000 genomes]
rs419106	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs427960	0.81[EUR][1000 genomes]
rs435611	0.81[EUR][1000 genomes]
rs442405	0.81[EUR][1000 genomes]
rs445796	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs449850	0.81[EUR][1000 genomes]
rs455839	0.81[EUR][1000 genomes]
rs458185	0.81[EUR][1000 genomes]
rs458740	0.81[EUR][1000 genomes]
rs459956	0.81[EUR][1000 genomes]
rs461487	0.80[EUR][1000 genomes]
rs463503	0.81[EUR][1000 genomes]
rs463916	0.83[EUR][1000 genomes]
rs670414	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs830553	0.85[EUR][1000 genomes]
rs9398188	0.81[EUR][1000 genomes]
rs9480910	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109510400-109516000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr6:109515600-109515800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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