Variant report
| Variant | rs35176178 |
|---|---|
| Chromosome Location | chr9:26702745-26702746 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10967477 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12377464 | 0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12380443 | 0.87[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs13284705 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs13284937 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs13285927 | 0.81[AMR][1000 genomes] |
| rs13286139 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs13289000 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs13289242 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs13292094 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs13292180 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs13292559 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs13294589 | 0.87[AMR][1000 genomes] |
| rs13295668 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs13295730 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs13295742 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs13298607 | 0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1434480 | 0.80[AMR][1000 genomes] |
| rs17755083 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs36002225 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs4531131 | 0.87[AMR][1000 genomes] |
| rs6475930 | 0.95[ASN][1000 genomes] |
| rs67775442 | 0.83[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv995049 | chr9:26162115-26760535 | Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv892854 | chr9:26326100-26749094 | Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv892858 | chr9:26609613-26783463 | Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1026827 | chr9:26693515-26904699 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:26702200-26703800 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 2 | chr9:26702400-26703000 | Enhancers | Cortex derived primary cultured neurospheres | brain |
