Variant report

Variant	rs13285927
Chromosome Location	chr9:26715357-26715358
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10967477	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12377464	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12380443	0.88[AMR][1000 genomes]
rs13284705	0.85[AMR][1000 genomes]
rs13284937	0.87[AMR][1000 genomes]
rs13286139	0.87[AMR][1000 genomes]
rs13287777	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13289242	0.84[AMR][1000 genomes]
rs13292094	0.82[AMR][1000 genomes]
rs13292180	0.83[AMR][1000 genomes]
rs13292559	0.81[AMR][1000 genomes]
rs13294589	0.85[AMR][1000 genomes]
rs13295668	0.81[AMR][1000 genomes]
rs13295730	0.81[AMR][1000 genomes]
rs13295742	0.83[AMR][1000 genomes]
rs13298607	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1434480	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17755083	0.81[AMR][1000 genomes]
rs35176178	0.81[AMR][1000 genomes]
rs36002225	0.86[AMR][1000 genomes]
rs4531131	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67775442	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995049	chr9:26162115-26760535	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892854	chr9:26326100-26749094	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv892858	chr9:26609613-26783463	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1026827	chr9:26693515-26904699	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv892860	chr9:26704385-26789940	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv892861	chr9:26707333-26789940	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv466332	chr9:26709294-26783463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv613941	chr9:26709294-26783463	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv1801032	chr9:26713320-26718477	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
10	nsv442140	chr9:26713320-26718477	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26715200-26716400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr9:26715200-26720400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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