Variant report

Variant	rs35190321
Chromosome Location	chr2:72709556-72709557
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10183056	0.81[EUR][1000 genomes]
rs10206555	0.81[EUR][1000 genomes]
rs581976	0.80[AMR][1000 genomes]
rs585653	0.81[EUR][1000 genomes]
rs597799	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs619343	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs632670	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs634929	0.86[AMR][1000 genomes]
rs642847	0.83[AMR][1000 genomes]
rs645489	0.81[EUR][1000 genomes]
rs646357	0.81[EUR][1000 genomes]
rs650352	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs654157	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs656370	0.81[EUR][1000 genomes]
rs656440	0.81[EUR][1000 genomes]
rs666361	0.81[EUR][1000 genomes]
rs6714580	0.81[EUR][1000 genomes]
rs671721	0.81[EUR][1000 genomes]
rs6736305	0.81[EUR][1000 genomes]
rs678684	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs683328	0.81[EUR][1000 genomes]
rs688433	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1005487	chr2:72464784-72819704	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv999179	chr2:72561463-72761103	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1008335	chr2:72561463-72819704	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv874264	chr2:72593243-72901170	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv582208	chr2:72690622-72835886	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv834257	chr2:72701083-72853548	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72691400-72712600	Weak transcription	Osteobl	bone
2	chr2:72691400-72724200	Weak transcription	Psoas Muscle	Psoas
3	chr2:72691400-72726400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr2:72691600-72724200	Weak transcription	HUVEC	blood vessel
5	chr2:72691600-72741800	Weak transcription	Colon Smooth Muscle	Colon
6	chr2:72692400-72742000	Weak transcription	Small Intestine	intestine
7	chr2:72692600-72727600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr2:72699600-72744600	Weak transcription	Liver	Liver
9	chr2:72700200-72742600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr2:72702600-72727000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr2:72702600-72727600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr2:72702600-72743600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr2:72702800-72712800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr2:72702800-72724800	Weak transcription	Brain Substantia Nigra	brain
15	chr2:72702800-72728200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr2:72703000-72713600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr2:72703000-72736400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr2:72703200-72712000	Weak transcription	Adipose Nuclei	Adipose
19	chr2:72703200-72720200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr2:72703200-72727600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr2:72703200-72727800	Weak transcription	NHEK	skin
22	chr2:72703200-72728000	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr2:72703200-72728600	Weak transcription	Right Ventricle	heart
24	chr2:72703200-72731000	Weak transcription	Left Ventricle	heart
25	chr2:72703200-72732600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr2:72703200-72732600	Weak transcription	Lung	lung
27	chr2:72703200-72735800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr2:72703200-72742800	Weak transcription	HSMM	muscle
29	chr2:72703200-72743000	Weak transcription	Pancreas	Pancrea
30	chr2:72703200-72743400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr2:72703200-72743800	Weak transcription	Brain Anterior Caudate	brain
32	chr2:72703400-72709600	Weak transcription	Fetal Muscle Leg	muscle
33	chr2:72703400-72715800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr2:72703400-72717400	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr2:72703400-72718600	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr2:72703400-72728600	Weak transcription	Esophagus	oesophagus
37	chr2:72703400-72729800	Weak transcription	Brain Germinal Matrix	brain
38	chr2:72703400-72729800	Weak transcription	Fetal Stomach	stomach
39	chr2:72703400-72741800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr2:72703400-72744200	Weak transcription	A549	lung
41	chr2:72703400-72752200	Weak transcription	Duodenum Mucosa	Duodenum
42	chr2:72703600-72745000	Weak transcription	Fetal Intestine Large	intestine
43	chr2:72704200-72728400	Weak transcription	Fetal Brain Female	brain
44	chr2:72704800-72728400	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr2:72705800-72718400	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr2:72706000-72729000	Weak transcription	HepG2	liver
47	chr2:72706200-72721200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr2:72707000-72720000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr2:72707000-72725800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr2:72707200-72724800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links