Variant report

Variant	rs671721
Chromosome Location	chr2:72703142-72703143
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:72701558..72703531-chr2:72704901..72708933,3	MCF-7	breast:
2	chr2:72691074..72693045-chr2:72701878..72703474,2	MCF-7	breast:

Extended variants
information (count: 244 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:237)

rs_ID	r²[population]
rs10168145	1.00[CHB][hapmap]
rs10173381	1.00[CHB][hapmap]
rs10181651	1.00[ASN][1000 genomes]
rs10183056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10186080	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs10190674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10203965	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.90[LWK][hapmap];0.86[MEX][hapmap];0.93[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10204415	1.00[CHB][hapmap]
rs10206555	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207299	1.00[CHB][hapmap]
rs10460572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10496186	1.00[ASN][1000 genomes]
rs10865391	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10865392	0.92[CEU][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap];1.00[ASN][1000 genomes]
rs11126366	1.00[CHB][hapmap]
rs11126370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11126371	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11126372	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11126373	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11126374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11126376	1.00[CHB][hapmap]
rs11677707	1.00[CHB][hapmap]
rs11684985	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11685114	1.00[CHB][hapmap]
rs11686713	1.00[CHB][hapmap];0.89[GIH][hapmap]
rs11690734	1.00[CHB][hapmap]
rs11694921	1.00[CHB][hapmap]
rs11902025	1.00[CHB][hapmap]
rs12052508	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12466613	1.00[CHB][hapmap]
rs12467816	1.00[CHB][hapmap]
rs12468057	1.00[CHB][hapmap]
rs12471136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap];1.00[ASN][1000 genomes]
rs12471312	1.00[CHB][hapmap];0.89[GIH][hapmap]
rs12471875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12476130	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12476397	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12618390	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12713772	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12713773	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12713774	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12992973	1.00[CHB][hapmap]
rs12996319	1.00[CHB][hapmap]
rs12996406	1.00[ASN][1000 genomes]
rs12998681	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13006497	1.00[CHB][hapmap];0.83[GIH][hapmap]
rs13008041	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap];1.00[ASN][1000 genomes]
rs13008258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap];1.00[ASN][1000 genomes]
rs13011477	1.00[CHB][hapmap]
rs13016873	1.00[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13383535	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13390754	1.00[CHB][hapmap]
rs13409513	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.94[TSI][hapmap];1.00[ASN][1000 genomes]
rs13424607	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13432350	1.00[CHB][hapmap]
rs1400580	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1400581	1.00[CHB][hapmap]
rs1400582	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446887	1.00[CHB][hapmap]
rs1446888	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.87[TSI][hapmap];1.00[ASN][1000 genomes]
rs1446889	1.00[ASN][1000 genomes]
rs1446890	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap];1.00[ASN][1000 genomes]
rs1446891	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap];1.00[ASN][1000 genomes]
rs1446892	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1446893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.87[TSI][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1446895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap];1.00[ASN][1000 genomes]
rs1446896	1.00[CHB][hapmap]
rs1517181	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1517185	1.00[CHB][hapmap]
rs1568145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1596930	1.00[CHB][hapmap]
rs1596931	1.00[CHB][hapmap]
rs1711838	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1992799	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2048171	1.00[ASN][1000 genomes]
rs2109960	1.00[CHB][hapmap]
rs2138683	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2203679	1.00[CHB][hapmap];0.82[GIH][hapmap]
rs2420444	1.00[CHB][hapmap]
rs2420565	1.00[ASN][1000 genomes]
rs2901146	1.00[CHB][hapmap]
rs3106879	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3106880	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3115351	1.00[CHB][hapmap];0.84[GIH][hapmap]
rs34127669	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34183790	0.84[EUR][1000 genomes]
rs35190321	0.81[EUR][1000 genomes]
rs4144318	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4364045	1.00[CHB][hapmap]
rs4407272	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4852287	1.00[CHB][hapmap]
rs4852288	1.00[CHB][hapmap]
rs4852291	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852292	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4852293	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4852294	1.00[ASN][1000 genomes]
rs4852298	1.00[ASN][1000 genomes]
rs4852872	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852873	1.00[CHB][hapmap];0.89[GIH][hapmap]
rs4852874	1.00[CHB][hapmap]
rs4852875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852876	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4852878	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];1.00[ASN][1000 genomes]
rs4852879	0.84[GIH][hapmap]
rs4852880	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4852883	1.00[CHB][hapmap];0.89[GIH][hapmap]
rs4852886	1.00[CHB][hapmap];0.83[GIH][hapmap]
rs4852888	1.00[CHB][hapmap]
rs581976	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs583673	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs585653	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs585938	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs587431	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.87[LWK][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs587744	1.00[CHB][hapmap]
rs589547	1.00[CHB][hapmap]
rs590252	1.00[CHB][hapmap]
rs590345	1.00[CHB][hapmap]
rs59095814	1.00[ASN][1000 genomes]
rs597799	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs598138	1.00[CHB][hapmap]
rs598496	1.00[CHB][hapmap]
rs598547	1.00[ASN][1000 genomes]
rs602465	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs603324	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs613880	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.87[LWK][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs614653	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs619343	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62149275	1.00[ASN][1000 genomes]
rs62149282	1.00[ASN][1000 genomes]
rs623095	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs625434	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs626469	1.00[ASW][hapmap];0.83[LWK][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes]
rs628432	1.00[CHB][hapmap]
rs630241	1.00[CHB][hapmap]
rs631550	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs632670	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs634476	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs634574	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs634785	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs634929	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636319	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs636332	1.00[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636734	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs638854	1.00[CHB][hapmap]
rs640610	1.00[CHB][hapmap]
rs641123	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs641939	1.00[CHB][hapmap]
rs642652	1.00[CHB][hapmap];0.84[GIH][hapmap]
rs642847	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs645489	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646357	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs647242	1.00[CHB][hapmap]
rs647269	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs650352	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs653220	1.00[CHB][hapmap];0.89[GIH][hapmap]
rs653842	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs654157	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546756	1.00[CHB][hapmap]
rs6546757	1.00[ASN][1000 genomes]
rs6546758	1.00[ASN][1000 genomes]
rs6546760	1.00[CHB][hapmap]
rs6546764	1.00[CHB][hapmap]
rs6546765	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6546776	1.00[ASN][1000 genomes]
rs6546777	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6546778	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6546779	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.94[TSI][hapmap];1.00[ASN][1000 genomes]
rs6546782	1.00[ASN][1000 genomes]
rs6546783	1.00[ASN][1000 genomes]
rs656370	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs656440	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs658067	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs659833	1.00[CHB][hapmap]
rs661395	1.00[ASN][1000 genomes]
rs663218	1.00[CHB][hapmap];0.84[GIH][hapmap]
rs664652	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs666233	1.00[CHB][hapmap]
rs666361	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs669074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6707435	1.00[ASN][1000 genomes]
rs6711257	1.00[ASN][1000 genomes]
rs6714580	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6714595	1.00[CHB][hapmap]
rs671550	1.00[ASN][1000 genomes]
rs6724529	1.00[CHB][hapmap]
rs6729863	1.00[CHB][hapmap]
rs6733210	1.00[CHB][hapmap]
rs6736305	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6741956	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6742088	1.00[ASN][1000 genomes]
rs6742264	1.00[CHB][hapmap]
rs6742312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6747378	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs674863	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6750766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6752122	1.00[CHB][hapmap]
rs6753073	1.00[CHB][hapmap]
rs6758462	1.00[CHB][hapmap]
rs6758593	1.00[CHB][hapmap];0.89[GIH][hapmap]
rs678684	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs680380	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs680495	1.00[CHB][hapmap]
rs681574	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs681908	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs683328	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs684673	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs687325	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs687371	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs688433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs689154	1.00[CHB][hapmap]
rs7420391	1.00[ASN][1000 genomes]
rs7420667	1.00[CHB][hapmap]
rs7558686	1.00[CHB][hapmap]
rs7558919	1.00[CHB][hapmap]
rs7559131	1.00[CHB][hapmap]
rs7560529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7560599	1.00[ASN][1000 genomes]
rs7565198	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7568803	1.00[CHB][hapmap]
rs7571064	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap];1.00[ASN][1000 genomes]
rs7577238	1.00[CHB][hapmap]
rs7577877	1.00[CHB][hapmap]
rs7583271	1.00[CHB][hapmap]
rs7584538	1.00[ASN][1000 genomes]
rs7591025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7591303	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7594350	1.00[CHB][hapmap]
rs7595180	1.00[CHB][hapmap]
rs7598238	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7601020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7601318	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7603797	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7603966	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9309464	1.00[CHB][hapmap]
rs983928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs990569	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1005487	chr2:72464784-72819704	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv999179	chr2:72561463-72761103	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1008335	chr2:72561463-72819704	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv874264	chr2:72593243-72901170	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv582208	chr2:72690622-72835886	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv834257	chr2:72701083-72853548	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs671721	CYP26B1	cis	Whole Blood	GTEx
rs671721	CYP26B1	cis	parietal	SCAN

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72691400-72712600	Weak transcription	Osteobl	bone
2	chr2:72691400-72724200	Weak transcription	Psoas Muscle	Psoas
3	chr2:72691400-72726400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr2:72691600-72707600	Weak transcription	Brain Angular Gyrus	brain
5	chr2:72691600-72724200	Weak transcription	HUVEC	blood vessel
6	chr2:72691600-72741800	Weak transcription	Colon Smooth Muscle	Colon
7	chr2:72692400-72742000	Weak transcription	Small Intestine	intestine
8	chr2:72692600-72727600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr2:72693000-72703400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr2:72699600-72744600	Weak transcription	Liver	Liver
11	chr2:72699800-72704200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr2:72700200-72742600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr2:72701600-72703800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr2:72701600-72704000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr2:72701600-72709200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr2:72702000-72703200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
17	chr2:72702000-72703200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
18	chr2:72702000-72703200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr2:72702000-72703200	Strong transcription	Brain Anterior Caudate	brain
20	chr2:72702000-72703200	ZNF genes & repeats	Colonic Mucosa	Colon
21	chr2:72702000-72703200	ZNF genes & repeats	Placenta	Placenta
22	chr2:72702000-72703200	ZNF genes & repeats	Ovary	ovary
23	chr2:72702000-72703200	Strong transcription	Right Ventricle	heart
24	chr2:72702000-72703200	ZNF genes & repeats	HSMMtube	muscle
25	chr2:72702000-72703400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr2:72702000-72703400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr2:72702000-72703400	ZNF genes & repeats	Fetal Stomach	stomach
28	chr2:72702000-72703400	Strong transcription	Placenta Amnion	Placenta Amnion
29	chr2:72702000-72703800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr2:72702000-72703800	Strong transcription	Fetal Heart	heart
31	chr2:72702000-72703800	ZNF genes & repeats	Fetal Lung	lung
32	chr2:72702000-72704200	ZNF genes & repeats	Fetal Brain Female	brain
33	chr2:72702200-72703200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr2:72702200-72703200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr2:72702200-72703200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr2:72702200-72703200	Strong transcription	Adipose Nuclei	Adipose
37	chr2:72702200-72703200	ZNF genes & repeats	Aorta	Aorta
38	chr2:72702200-72703200	Strong transcription	Brain Cingulate Gyrus	brain
39	chr2:72702200-72703200	Strong transcription	Brain Hippocampus Middle	brain
40	chr2:72702200-72703200	Strong transcription	Brain Inferior Temporal Lobe	brain
41	chr2:72702200-72703200	ZNF genes & repeats	Fetal Intestine Large	intestine
42	chr2:72702200-72703200	ZNF genes & repeats	Fetal Intestine Small	intestine
43	chr2:72702200-72703200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
44	chr2:72702200-72703200	Strong transcription	Left Ventricle	heart
45	chr2:72702200-72703200	ZNF genes & repeats	Lung	lung
46	chr2:72702200-72703200	Strong transcription	Pancreas	Pancrea
47	chr2:72702200-72703200	Strong transcription	Skeletal Muscle Male	skeletal muscle
48	chr2:72702200-72703400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr2:72702200-72703400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr2:72702200-72703400	ZNF genes & repeats	Brain Germinal Matrix	brain

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