Variant report

Variant	rs4852292
Chromosome Location	chr2:72825478-72825479
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 157 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:152)

rs_ID	r²[population]
rs10183056	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10206555	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1032982	1.00[CHB][hapmap]
rs10460572	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs10496186	1.00[CEU][hapmap]
rs10865391	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs10865392	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs11126370	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap]
rs11126373	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs11126374	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs11126376	1.00[CHB][hapmap]
rs11126378	0.85[YRI][hapmap]
rs11676555	1.00[CHB][hapmap]
rs11677707	1.00[CHB][hapmap]
rs11679683	1.00[CHB][hapmap]
rs11684985	1.00[CHB][hapmap]
rs11685114	1.00[CHB][hapmap]
rs11686713	1.00[CHB][hapmap]
rs11689339	0.82[YRI][hapmap]
rs11892598	0.82[YRI][hapmap]
rs12052508	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs12471136	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs12471312	1.00[CHB][hapmap]
rs12476130	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs12476397	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12618390	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs12713772	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs12713773	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs12713774	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs12992973	1.00[CHB][hapmap]
rs12996319	1.00[CHB][hapmap]
rs12996406	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12998681	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs13006497	1.00[CHB][hapmap]
rs13008041	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs13008258	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs13011477	1.00[CHB][hapmap]
rs13016873	1.00[CEU][hapmap];0.85[YRI][hapmap];0.86[EUR][1000 genomes]
rs1400581	1.00[CHB][hapmap]
rs1446887	1.00[CHB][hapmap]
rs1446888	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs1446889	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1446890	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs1446891	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs1446892	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs1446893	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs1446895	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs1446896	1.00[CHB][hapmap]
rs1508061	1.00[CHB][hapmap]
rs1517181	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1517185	1.00[CHB][hapmap]
rs1562361	0.82[YRI][hapmap]
rs1596930	1.00[CHB][hapmap]
rs1596931	1.00[CHB][hapmap]
rs17008371	0.82[YRI][hapmap]
rs1711838	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17503444	1.00[CHB][hapmap]
rs1911690	1.00[CHB][hapmap]
rs1992799	0.89[EUR][1000 genomes]
rs1995734	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2048171	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2138683	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2203679	1.00[CHB][hapmap]
rs2420565	0.86[EUR][1000 genomes]
rs2901146	1.00[CHB][hapmap]
rs3115351	1.00[CHB][hapmap]
rs4144318	0.86[EUR][1000 genomes]
rs4364045	1.00[CHB][hapmap]
rs4407272	0.89[EUR][1000 genomes]
rs4852291	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs4852293	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs4852298	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4852872	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs4852873	1.00[CHB][hapmap]
rs4852874	1.00[CHB][hapmap]
rs4852875	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.86[EUR][1000 genomes]
rs4852876	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs4852877	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs4852878	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs4852880	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs4852883	1.00[CHB][hapmap]
rs4852886	1.00[CHB][hapmap]
rs4852888	1.00[CHB][hapmap]
rs4852889	1.00[CHB][hapmap]
rs4852890	1.00[CHB][hapmap]
rs4852891	1.00[CHB][hapmap]
rs583673	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs585653	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs585938	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs587744	1.00[CHB][hapmap]
rs589547	1.00[CHB][hapmap]
rs590345	1.00[CHB][hapmap]
rs632670	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs634476	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs634929	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs640610	1.00[CHB][hapmap]
rs645489	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs646357	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs647242	1.00[CHB][hapmap]
rs647269	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs650352	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs653220	1.00[CHB][hapmap]
rs6546776	0.89[EUR][1000 genomes]
rs6546777	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6546778	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs6546779	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs6546781	1.00[CHB][hapmap]
rs6546782	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6546783	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs656370	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs656440	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs658067	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs659833	1.00[CHB][hapmap]
rs663218	1.00[CHB][hapmap]
rs666361	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6713143	0.85[YRI][hapmap]
rs6714595	1.00[CHB][hapmap]
rs671721	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6724529	1.00[CHB][hapmap]
rs6736305	1.00[CEU][hapmap]
rs6742088	0.86[EUR][1000 genomes]
rs6742312	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs6747378	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs674863	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6750766	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs6758593	1.00[CHB][hapmap]
rs6761075	0.85[EUR][1000 genomes]
rs678684	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs680380	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs681574	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs683328	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs684673	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs688433	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs689154	1.00[CHB][hapmap]
rs7420391	0.82[EUR][1000 genomes]
rs7420667	1.00[CHB][hapmap]
rs7560529	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs7560599	0.86[EUR][1000 genomes]
rs7565198	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7571064	0.92[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs7577238	1.00[CHB][hapmap]
rs7580268	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7588400	1.00[CHB][hapmap]
rs7591025	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7591303	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs7593084	0.85[YRI][hapmap]
rs7598238	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs7601020	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs7601318	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs7603797	0.86[EUR][1000 genomes]
rs983928	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs990569	1.00[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv874264	chr2:72593243-72901170	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv582208	chr2:72690622-72835886	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv834257	chr2:72701083-72853548	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv874265	chr2:72789764-72982609	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72809200-72833800	Weak transcription	Left Ventricle	heart

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