Variant report

Variant	rs11684985
Chromosome Location	chr2:72895293-72895294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 168 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:166)

rs_ID	r²[population]
rs10183056	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10206555	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10211019	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1032982	1.00[CHB][hapmap]
rs10460572	1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10496186	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10865391	1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10865392	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11126370	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11126371	1.00[ASN][1000 genomes]
rs11126372	1.00[ASN][1000 genomes]
rs11126373	1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11126374	1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11126376	1.00[CHB][hapmap]
rs11126385	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11676555	1.00[CHB][hapmap]
rs11677707	1.00[CHB][hapmap]
rs11679683	1.00[CHB][hapmap]
rs11685114	1.00[CHB][hapmap]
rs11686713	1.00[CHB][hapmap]
rs11894160	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12052508	1.00[CHB][hapmap]
rs12471136	1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12471312	1.00[CHB][hapmap]
rs12476130	1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12476397	1.00[ASN][1000 genomes]
rs12618390	1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12713772	1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12713773	1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12713774	1.00[CHB][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12713775	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs12989141	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12992973	1.00[CHB][hapmap]
rs12996319	1.00[CHB][hapmap]
rs12996406	1.00[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12998681	1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13006497	1.00[CHB][hapmap]
rs13008041	1.00[CHB][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13008258	1.00[CHB][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13011477	1.00[CHB][hapmap]
rs13016873	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13424607	1.00[ASN][1000 genomes]
rs1396106	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1400580	1.00[ASN][1000 genomes]
rs1400581	1.00[CHB][hapmap]
rs1446887	1.00[CHB][hapmap]
rs1446888	1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446889	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446890	1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446891	1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446892	1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446893	1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446895	1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446896	1.00[CHB][hapmap]
rs1508061	1.00[CHB][hapmap]
rs1517181	1.00[CHB][hapmap]
rs1517185	1.00[CHB][hapmap]
rs1567230	0.84[CEU][hapmap]
rs1596930	1.00[CHB][hapmap]
rs1596931	1.00[CHB][hapmap]
rs1711838	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17503444	1.00[CHB][hapmap]
rs1911690	1.00[CHB][hapmap]
rs1992799	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1995734	1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2048171	1.00[CHB][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2138683	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2420565	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2420880	0.85[CEU][hapmap]
rs3106879	1.00[ASN][1000 genomes]
rs3106880	1.00[ASN][1000 genomes]
rs34127669	1.00[ASN][1000 genomes]
rs4144318	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4321391	0.85[CEU][hapmap]
rs4364045	1.00[CHB][hapmap]
rs4407272	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852291	1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852292	1.00[CHB][hapmap]
rs4852293	1.00[CHB][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852294	1.00[ASN][1000 genomes]
rs4852298	1.00[CHB][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852872	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4852873	1.00[CHB][hapmap]
rs4852874	1.00[CHB][hapmap]
rs4852875	1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852876	1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852877	1.00[CHB][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852878	1.00[CHB][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852880	1.00[CHB][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852883	1.00[CHB][hapmap]
rs4852886	1.00[CHB][hapmap]
rs4852888	1.00[CHB][hapmap]
rs4852889	1.00[CHB][hapmap]
rs4852890	1.00[CHB][hapmap]
rs4852891	1.00[CHB][hapmap]
rs4852893	0.85[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs581976	1.00[ASN][1000 genomes]
rs583673	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs585653	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs585938	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs597799	1.00[ASN][1000 genomes]
rs619343	1.00[ASN][1000 genomes]
rs623095	1.00[ASN][1000 genomes]
rs631550	1.00[ASN][1000 genomes]
rs632670	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs634476	1.00[ASN][1000 genomes]
rs634929	1.00[ASN][1000 genomes]
rs642847	1.00[ASN][1000 genomes]
rs645489	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs646357	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs647269	1.00[ASN][1000 genomes]
rs650352	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs653220	1.00[CHB][hapmap]
rs654157	1.00[ASN][1000 genomes]
rs6546776	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546777	1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546778	1.00[CHB][hapmap];0.81[YRI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546779	1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546781	1.00[CHB][hapmap]
rs6546782	1.00[CHB][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546783	1.00[CHB][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs656370	1.00[ASN][1000 genomes]
rs656440	1.00[ASN][1000 genomes]
rs658067	1.00[ASN][1000 genomes]
rs666361	1.00[ASN][1000 genomes]
rs6707435	1.00[ASN][1000 genomes]
rs6714580	1.00[ASN][1000 genomes]
rs6714595	1.00[CHB][hapmap]
rs671721	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6724529	1.00[CHB][hapmap]
rs6736305	1.00[ASN][1000 genomes]
rs6739002	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6741956	1.00[ASN][1000 genomes]
rs6742088	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6742312	1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6747378	1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs674863	1.00[ASN][1000 genomes]
rs6750766	1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6758593	1.00[CHB][hapmap]
rs6761075	0.85[EUR][1000 genomes]
rs678684	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs680380	1.00[ASN][1000 genomes]
rs681574	1.00[ASN][1000 genomes]
rs683328	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs684673	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs688433	1.00[ASN][1000 genomes]
rs7420391	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7420667	1.00[CHB][hapmap]
rs7560529	1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7560599	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7565198	1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7571064	1.00[CHB][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7577238	1.00[CHB][hapmap]
rs7580268	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7586787	0.81[EUR][1000 genomes]
rs7588400	1.00[CHB][hapmap]
rs7588602	0.85[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7591025	1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7591303	1.00[CHB][hapmap];0.92[YRI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7592155	0.84[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7598238	1.00[CHB][hapmap];0.81[YRI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7601020	1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7601318	1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7603797	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs983928	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs990569	1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874264	chr2:72593243-72901170	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv874265	chr2:72789764-72982609	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11684985	CYP26B1	cis	Whole Blood	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72858400-72904000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:72866800-72902600	Weak transcription	Left Ventricle	heart
3	chr2:72873000-72903800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:72892000-72905400	Weak transcription	Pancreas	Pancrea
5	chr2:72892400-72900400	Weak transcription	Ovary	ovary
6	chr2:72892800-72896000	Weak transcription	NHDF-Ad	bronchial
7	chr2:72894800-72895800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:72895000-72895400	ZNF genes & repeats	Fetal Lung	lung
9	chr2:72895000-72895800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links