Variant report

Variant	rs4852890
Chromosome Location	chr2:72908698-72908699
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10183056	1.00[CHB][hapmap]
rs10206555	1.00[CHB][hapmap]
rs1032982	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10460572	1.00[CHB][hapmap]
rs10865391	1.00[CHB][hapmap]
rs11126370	1.00[CHB][hapmap]
rs11126373	1.00[CHB][hapmap]
rs11126374	1.00[CHB][hapmap]
rs11126376	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs11676555	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11677707	0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11679683	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11684985	1.00[CHB][hapmap]
rs11685114	0.91[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11686713	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs11693376	0.82[CEU][hapmap]
rs12052508	1.00[CHB][hapmap]
rs12468173	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12468179	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12471136	1.00[CHB][hapmap]
rs12471312	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs12476130	1.00[CHB][hapmap]
rs12617074	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12618390	1.00[CHB][hapmap]
rs12713772	1.00[CHB][hapmap]
rs12713773	1.00[CHB][hapmap]
rs12713774	1.00[CHB][hapmap]
rs12992973	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs12996319	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12996406	1.00[CHB][hapmap]
rs12998681	1.00[CHB][hapmap]
rs13006497	0.90[CEU][hapmap];1.00[CHB][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13008041	1.00[CHB][hapmap]
rs13008258	1.00[CHB][hapmap]
rs13008515	0.82[CEU][hapmap]
rs13011477	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs1400581	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs1446887	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1446888	1.00[CHB][hapmap]
rs1446890	1.00[CHB][hapmap]
rs1446891	1.00[CHB][hapmap]
rs1446892	1.00[CHB][hapmap]
rs1446893	1.00[CHB][hapmap]
rs1446895	1.00[CHB][hapmap]
rs1446896	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1508061	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1517181	1.00[CHB][hapmap]
rs1517185	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs1596930	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs1596931	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs1711838	1.00[CHB][hapmap]
rs17503444	1.00[CHB][hapmap]
rs1911690	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1995734	1.00[CHB][hapmap]
rs2048171	1.00[CHB][hapmap]
rs2063170	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2138683	1.00[CHB][hapmap]
rs4364045	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs4852291	1.00[CHB][hapmap]
rs4852292	1.00[CHB][hapmap]
rs4852293	1.00[CHB][hapmap]
rs4852294	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4852298	1.00[CHB][hapmap]
rs4852872	1.00[CHB][hapmap]
rs4852873	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs4852874	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs4852875	1.00[CHB][hapmap]
rs4852876	1.00[CHB][hapmap]
rs4852877	1.00[CHB][hapmap]
rs4852878	1.00[CHB][hapmap]
rs4852879	0.90[CEU][hapmap]
rs4852880	1.00[CHB][hapmap]
rs4852883	0.90[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4852886	0.90[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852888	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852891	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs583673	1.00[CHB][hapmap]
rs585938	1.00[CHB][hapmap]
rs650352	1.00[CHB][hapmap]
rs6546777	1.00[CHB][hapmap]
rs6546778	1.00[CHB][hapmap]
rs6546779	1.00[CHB][hapmap]
rs6546781	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546782	1.00[CHB][hapmap]
rs6546783	1.00[CHB][hapmap]
rs6708156	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6714595	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs6724529	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6742312	1.00[CHB][hapmap]
rs6747378	1.00[CHB][hapmap]
rs6750766	1.00[CHB][hapmap]
rs6758593	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs683328	1.00[CHB][hapmap]
rs7420667	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs7560529	1.00[CHB][hapmap]
rs7565198	1.00[CHB][hapmap]
rs7571064	1.00[CHB][hapmap]
rs7577238	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs7580268	1.00[CHB][hapmap]
rs7588400	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7588602	1.00[CHB][hapmap]
rs7591025	1.00[CHB][hapmap]
rs7591303	1.00[CHB][hapmap]
rs7592155	1.00[CHB][hapmap]
rs7598238	1.00[CHB][hapmap]
rs7600273	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7601020	1.00[CHB][hapmap]
rs7601318	1.00[CHB][hapmap]
rs983928	1.00[CHB][hapmap]
rs990569	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874265	chr2:72789764-72982609	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72896800-72943000	Weak transcription	Primary T cells from cord blood	blood
2	chr2:72897000-72912600	Weak transcription	NHLF	lung
3	chr2:72897800-72909800	Weak transcription	Brain Germinal Matrix	brain
4	chr2:72900200-72911800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr2:72901600-72919200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:72902600-72913200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr2:72902600-72921200	Weak transcription	Adipose Nuclei	Adipose
8	chr2:72902800-72909200	Weak transcription	Fetal Intestine Small	intestine
9	chr2:72903000-72909400	Weak transcription	Gastric	stomach
10	chr2:72903000-72910600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr2:72903600-72937400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr2:72903800-72921800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr2:72903800-72922200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr2:72904200-72916400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr2:72904200-72916600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:72904400-72913000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr2:72904400-72916400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr2:72904400-72922000	Weak transcription	NHDF-Ad	bronchial
19	chr2:72904400-72939000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr2:72904800-72916800	Weak transcription	NHEK	skin
21	chr2:72905600-72921400	Weak transcription	Placenta	Placenta
22	chr2:72905600-72922000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr2:72905600-72943200	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr2:72905800-72912400	Weak transcription	Brain Angular Gyrus	brain
25	chr2:72905800-72912400	Weak transcription	Ovary	ovary
26	chr2:72905800-72912600	Weak transcription	Fetal Lung	lung
27	chr2:72905800-72916800	Weak transcription	Psoas Muscle	Psoas
28	chr2:72905800-72921400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr2:72905800-72984400	Weak transcription	Aorta	Aorta
30	chr2:72906000-72909200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr2:72907400-72910400	Enhancers	Fetal Heart	heart
32	chr2:72908000-72909400	Enhancers	HSMMtube	muscle
33	chr2:72908000-72916600	Weak transcription	Left Ventricle	heart
34	chr2:72908400-72909400	Enhancers	A549	lung
35	chr2:72908400-72909600	Enhancers	HepG2	liver
36	chr2:72908600-72908800	Enhancers	Fetal Stomach	stomach

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