Variant report

Variant	rs7600273
Chromosome Location	chr2:72855543-72855544
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1032982	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11126376	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11676555	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11677707	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11679683	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11685114	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11686713	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11893504	0.83[EUR][1000 genomes]
rs12052508	1.00[ASN][1000 genomes]
rs12468173	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12468179	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12471312	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12617074	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12992973	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12996319	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13006497	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13011477	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1400581	1.00[ASN][1000 genomes]
rs1446887	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1446896	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1508061	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1517185	1.00[ASN][1000 genomes]
rs1596930	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1596931	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1911690	0.81[EUR][1000 genomes]
rs1947118	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2063170	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2203679	1.00[ASN][1000 genomes]
rs2901146	1.00[ASN][1000 genomes]
rs3115351	1.00[ASN][1000 genomes]
rs4364045	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852294	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4852873	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852874	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852879	0.90[EUR][1000 genomes]
rs4852883	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852886	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4852888	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4852889	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4852890	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4852891	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs583119	1.00[ASN][1000 genomes]
rs584522	1.00[ASN][1000 genomes]
rs587744	1.00[ASN][1000 genomes]
rs589547	1.00[ASN][1000 genomes]
rs590252	1.00[ASN][1000 genomes]
rs590345	1.00[ASN][1000 genomes]
rs620770	1.00[ASN][1000 genomes]
rs628432	1.00[ASN][1000 genomes]
rs630241	1.00[ASN][1000 genomes]
rs634586	1.00[ASN][1000 genomes]
rs638854	1.00[ASN][1000 genomes]
rs640610	1.00[ASN][1000 genomes]
rs641939	1.00[ASN][1000 genomes]
rs642652	1.00[ASN][1000 genomes]
rs647242	1.00[ASN][1000 genomes]
rs653220	1.00[ASN][1000 genomes]
rs6546781	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs659833	1.00[ASN][1000 genomes]
rs663218	1.00[ASN][1000 genomes]
rs668586	1.00[ASN][1000 genomes]
rs6708156	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6714419	1.00[ASN][1000 genomes]
rs6714595	1.00[ASN][1000 genomes]
rs6724529	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6758593	1.00[ASN][1000 genomes]
rs689154	1.00[ASN][1000 genomes]
rs7420588	1.00[ASN][1000 genomes]
rs7420667	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7563738	1.00[ASN][1000 genomes]
rs7577238	0.82[EUR][1000 genomes]
rs7588400	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874264	chr2:72593243-72901170	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv874265	chr2:72789764-72982609	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72840200-72878600	Weak transcription	Aorta	Aorta
2	chr2:72843800-72866200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:72845000-72862400	Weak transcription	Fetal Intestine Small	intestine
4	chr2:72847200-72856200	Weak transcription	Brain Substantia Nigra	brain
5	chr2:72847400-72857200	Weak transcription	Right Ventricle	heart
6	chr2:72847400-72865600	Weak transcription	Right Atrium	heart
7	chr2:72847400-72865800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr2:72847400-72869000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr2:72851000-72857200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr2:72853000-72855800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr2:72853200-72855600	Weak transcription	Brain Anterior Caudate	brain
12	chr2:72853200-72857400	Weak transcription	Brain Angular Gyrus	brain
13	chr2:72853800-72856000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr2:72854200-72868400	Weak transcription	Fetal Stomach	stomach
15	chr2:72854400-72857200	Weak transcription	Brain Hippocampus Middle	brain
16	chr2:72854600-72855800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr2:72855000-72855600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr2:72855000-72855600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr2:72855000-72855800	Weak transcription	Ovary	ovary
20	chr2:72855000-72856000	Weak transcription	Adipose Nuclei	Adipose
21	chr2:72855000-72857800	Weak transcription	Fetal Lung	lung
22	chr2:72855200-72856000	Enhancers	Left Ventricle	heart

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