Variant report

Variant	rs7588400
Chromosome Location	chr2:72977153-72977154
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:72971179..72973717-chr2:72974748..72977332,2	K562	blood:

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs1032982	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11126374	1.00[CHB][hapmap]
rs11126376	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs1150500	1.00[CHB][hapmap]
rs1161265	1.00[CHB][hapmap]
rs1161267	1.00[CHB][hapmap]
rs11676555	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11677707	0.91[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11679683	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11684985	1.00[CHB][hapmap]
rs11685114	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11686713	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs11693376	0.82[CEU][hapmap]
rs12468173	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12468179	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12471136	1.00[CHB][hapmap]
rs12471312	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs12476130	1.00[CHB][hapmap]
rs12617074	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12713774	1.00[CHB][hapmap]
rs12996319	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12996406	1.00[CHB][hapmap]
rs13006497	0.90[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13008041	1.00[CHB][hapmap]
rs13008258	1.00[CHB][hapmap]
rs13008515	0.82[CEU][hapmap]
rs13011477	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs1446887	0.91[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1446888	1.00[CHB][hapmap]
rs1446890	1.00[CHB][hapmap]
rs1446891	1.00[CHB][hapmap]
rs1446892	1.00[CHB][hapmap]
rs1446893	1.00[CHB][hapmap]
rs1446895	1.00[CHB][hapmap]
rs1446896	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1508061	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1596930	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs1596931	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs17503444	1.00[CHB][hapmap]
rs1876490	1.00[YRI][hapmap]
rs1911690	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1995734	1.00[CHB][hapmap]
rs2048171	1.00[CHB][hapmap]
rs2063170	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421095	1.00[CHB][hapmap]
rs4364045	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs4852292	1.00[CHB][hapmap]
rs4852293	1.00[CHB][hapmap]
rs4852294	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4852298	1.00[CHB][hapmap]
rs4852878	1.00[CHB][hapmap]
rs4852879	0.90[CEU][hapmap]
rs4852880	1.00[CHB][hapmap]
rs4852883	0.90[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4852886	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852888	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852889	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852890	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852891	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546777	1.00[CHB][hapmap]
rs6546778	1.00[CHB][hapmap]
rs6546779	1.00[CHB][hapmap]
rs6546781	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546782	1.00[CHB][hapmap]
rs6546783	1.00[CHB][hapmap]
rs6708156	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6724529	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6730083	1.00[CHB][hapmap]
rs6742312	1.00[CHB][hapmap]
rs6747378	1.00[CHB][hapmap]
rs7560529	1.00[CHB][hapmap]
rs7565198	1.00[CHB][hapmap]
rs7571064	1.00[CHB][hapmap]
rs7577238	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs7580268	1.00[CHB][hapmap]
rs7588602	1.00[CHB][hapmap]
rs7591025	1.00[CHB][hapmap]
rs7591303	1.00[CHB][hapmap]
rs7592155	1.00[CHB][hapmap]
rs7598238	1.00[CHB][hapmap]
rs7600273	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7601020	1.00[CHB][hapmap]
rs7601318	1.00[CHB][hapmap]
rs990569	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874265	chr2:72789764-72982609	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv834259	chr2:72941118-73114106	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72905800-72984400	Weak transcription	Aorta	Aorta
2	chr2:72923000-73008600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr2:72937800-72978400	Weak transcription	Brain Germinal Matrix	brain
4	chr2:72938200-72987800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr2:72943600-72978800	Weak transcription	Primary T cells from cord blood	blood
6	chr2:72945600-72977800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:72946800-72980200	Weak transcription	Left Ventricle	heart
8	chr2:72950000-72982400	Weak transcription	Colon Smooth Muscle	Colon
9	chr2:72968600-72980000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr2:72971200-72977200	Weak transcription	Stomach Mucosa	stomach
11	chr2:72971800-72982800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr2:72972200-72980400	Weak transcription	Right Ventricle	heart
13	chr2:72972800-72982600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr2:72973000-72982200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:72973000-72982600	Weak transcription	Hela-S3	cervix
16	chr2:72973200-72977400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr2:72974600-72981000	Enhancers	Fetal Heart	heart
18	chr2:72974800-72982200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr2:72975200-72982800	Weak transcription	Brain Substantia Nigra	brain
20	chr2:72975600-72978200	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr2:72975800-72977200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr2:72975800-72977800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr2:72976000-72977800	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr2:72976000-72979600	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr2:72976000-72980000	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr2:72976000-72988400	Weak transcription	Fetal Lung	lung
27	chr2:72976200-72977400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr2:72976200-72977600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr2:72976400-72977400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr2:72976400-72977400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr2:72977000-72978600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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