Variant report

Variant	rs17503444
Chromosome Location	chr2:73015587-73015588
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:73013944..73016262-chr2:73016329..73018637,2	MCF-7	breast:
2	chr2:73005561..73008287-chr2:73013909..73016278,2	MCF-7	breast:
3	chr2:73009983..73011602-chr2:73014028..73016616,2	K562	blood:

rs_ID	r²[population]
rs1032982	1.00[CHB][hapmap]
rs1150500	1.00[CHB][hapmap]
rs1161265	1.00[CHB][hapmap]
rs1161267	1.00[CHB][hapmap]
rs11676555	1.00[CHB][hapmap]
rs11677707	1.00[CHB][hapmap]
rs11679683	1.00[CHB][hapmap]
rs11684985	1.00[CHB][hapmap]
rs11685114	1.00[CHB][hapmap]
rs12713774	1.00[CHB][hapmap]
rs12996319	1.00[CHB][hapmap]
rs12996406	1.00[CHB][hapmap]
rs13006497	1.00[CHB][hapmap]
rs1446887	1.00[CHB][hapmap]
rs1446893	1.00[CHB][hapmap]
rs1446895	1.00[CHB][hapmap]
rs1446896	1.00[CHB][hapmap]
rs1508061	1.00[CHB][hapmap]
rs1596930	1.00[CHB][hapmap]
rs1596931	1.00[CHB][hapmap]
rs17562087	1.00[AMR][1000 genomes]
rs1911690	1.00[CHB][hapmap]
rs1995734	1.00[CHB][hapmap]
rs2048171	1.00[CHB][hapmap]
rs2421095	1.00[CHB][hapmap]
rs4852292	1.00[CHB][hapmap]
rs4852293	1.00[CHB][hapmap]
rs4852298	1.00[CHB][hapmap]
rs4852880	1.00[CHB][hapmap]
rs4852883	1.00[CHB][hapmap]
rs4852886	1.00[CHB][hapmap]
rs4852888	1.00[CHB][hapmap]
rs4852889	1.00[CHB][hapmap]
rs4852890	1.00[CHB][hapmap]
rs4852891	1.00[CHB][hapmap]
rs6546778	1.00[CHB][hapmap]
rs6546779	1.00[CHB][hapmap]
rs6546781	1.00[CHB][hapmap]
rs6546782	1.00[CHB][hapmap]
rs6546783	1.00[CHB][hapmap]
rs6724529	1.00[CHB][hapmap]
rs6730083	1.00[CHB][hapmap]
rs7571064	1.00[CHB][hapmap]
rs7580268	1.00[CHB][hapmap]
rs7588400	1.00[CHB][hapmap]
rs7588602	1.00[CHB][hapmap]
rs7591025	1.00[CHB][hapmap]
rs7592155	1.00[CHB][hapmap]
rs7598238	1.00[CHB][hapmap]
rs7601318	1.00[CHB][hapmap]
rs990569	1.00[CHB][hapmap]

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834259	chr2:72941118-73114106	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72985200-73015800	Weak transcription	Ovary	ovary
2	chr2:72989400-73015800	Weak transcription	Placenta	Placenta
3	chr2:72990800-73018400	Weak transcription	Aorta	Aorta
4	chr2:72991200-73015800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:72991200-73015800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:72991200-73023000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr2:72999800-73022000	Weak transcription	Right Ventricle	heart
8	chr2:73005400-73016200	Weak transcription	Colon Smooth Muscle	Colon
9	chr2:73005800-73015800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr2:73005800-73016200	Weak transcription	HSMM	muscle
11	chr2:73008000-73016000	Weak transcription	HMEC	breast
12	chr2:73008600-73015600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr2:73008600-73020600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr2:73008800-73015600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr2:73008800-73016200	Weak transcription	Brain Angular Gyrus	brain
16	chr2:73008800-73016200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr2:73009200-73021000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr2:73010200-73021000	Weak transcription	Brain Anterior Caudate	brain
19	chr2:73010400-73020400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr2:73011400-73015600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr2:73011800-73020800	Weak transcription	Fetal Lung	lung
22	chr2:73011800-73021200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr2:73013000-73015800	Weak transcription	Left Ventricle	heart
24	chr2:73013000-73016000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr2:73013200-73020400	Weak transcription	Fetal Stomach	stomach
26	chr2:73013400-73015800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr2:73013600-73015800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr2:73014000-73016000	Weak transcription	Brain Hippocampus Middle	brain
29	chr2:73014000-73020800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr2:73014000-73033400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr2:73014200-73016000	Weak transcription	Fetal Heart	heart
32	chr2:73014200-73016200	Weak transcription	Stomach Mucosa	stomach
33	chr2:73015000-73016200	Weak transcription	Brain Substantia Nigra	brain
34	chr2:73015000-73021000	Weak transcription	Lung	lung
35	chr2:73015400-73016800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr2:73015400-73018200	Enhancers	NHEK	skin

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