Variant report

Variant	rs2063170
Chromosome Location	chr2:72936787-72936788
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1032982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11676555	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11677707	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11679683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11685114	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12468173	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12468179	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12617074	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12996319	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13006497	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446887	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1446896	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1508061	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1911690	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852294	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4852883	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4852886	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852888	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852889	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852890	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852891	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6708156	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6724529	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7588400	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7600273	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874265	chr2:72789764-72982609	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72896800-72943000	Weak transcription	Primary T cells from cord blood	blood
2	chr2:72903600-72937400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr2:72904400-72939000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:72905600-72943200	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr2:72905800-72984400	Weak transcription	Aorta	Aorta
6	chr2:72912200-72942800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr2:72913400-72945000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:72917000-72950000	Weak transcription	Brain Angular Gyrus	brain
9	chr2:72917200-72946200	Weak transcription	HMEC	breast
10	chr2:72917400-72944800	Weak transcription	NHEK	skin
11	chr2:72920400-72945000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr2:72922000-72946200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr2:72922200-72942800	Weak transcription	Placenta	Placenta
14	chr2:72922400-72939400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr2:72922400-72941000	Weak transcription	Left Ventricle	heart
16	chr2:72922400-72942800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr2:72922400-72945800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr2:72922400-72949800	Weak transcription	Fetal Brain Female	brain
19	chr2:72922400-72972000	Weak transcription	Right Ventricle	heart
20	chr2:72922400-72976200	Weak transcription	Psoas Muscle	Psoas
21	chr2:72922600-72942800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr2:72922600-72951000	Weak transcription	Fetal Muscle Leg	muscle
23	chr2:72922800-72939400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr2:72922800-72949600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr2:72923000-72939400	Weak transcription	HepG2	liver
26	chr2:72923000-72944600	Weak transcription	Fetal Lung	lung
27	chr2:72923000-72945600	Weak transcription	Fetal Stomach	stomach
28	chr2:72923000-72972800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr2:72923000-73008600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr2:72923200-72946000	Weak transcription	A549	lung
31	chr2:72923600-72958200	Weak transcription	Brain Cingulate Gyrus	brain
32	chr2:72924000-72941400	Weak transcription	Fetal Heart	heart
33	chr2:72924000-72945200	Weak transcription	Ovary	ovary
34	chr2:72927600-72946200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr2:72927800-72943200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr2:72928400-72939400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr2:72929000-72951200	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr2:72930400-72946200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr2:72931000-72937800	Weak transcription	Colon Smooth Muscle	Colon
40	chr2:72931400-72946200	Weak transcription	Esophagus	oesophagus
41	chr2:72932000-72939600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr2:72933600-72939200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr2:72933600-72946200	Weak transcription	Pancreas	Pancrea
44	chr2:72934200-72939400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr2:72934200-72946200	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr2:72934600-72945800	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr2:72935200-72944600	Weak transcription	Primary B cells from peripheral blood	blood
48	chr2:72935400-72942800	Weak transcription	Adipose Nuclei	Adipose
49	chr2:72935600-72946200	Weak transcription	Small Intestine	intestine
50	chr2:72936000-72944800	Weak transcription	Fetal Kidney	kidney

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