Variant report

Variant	rs584522
Chromosome Location	chr2:72631258-72631259
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10173381	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10194216	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11126366	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11126376	1.00[ASN][1000 genomes]
rs11686713	1.00[ASN][1000 genomes]
rs12052508	1.00[ASN][1000 genomes]
rs12468057	0.83[EUR][1000 genomes]
rs12471312	1.00[ASN][1000 genomes]
rs12992973	1.00[ASN][1000 genomes]
rs13011477	1.00[ASN][1000 genomes]
rs13390754	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1400581	1.00[ASN][1000 genomes]
rs1517185	1.00[ASN][1000 genomes]
rs1596930	1.00[ASN][1000 genomes]
rs1596931	1.00[ASN][1000 genomes]
rs1947118	1.00[ASN][1000 genomes]
rs2203679	1.00[ASN][1000 genomes]
rs2420444	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901146	1.00[ASN][1000 genomes]
rs3115351	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4364045	1.00[ASN][1000 genomes]
rs4852873	1.00[ASN][1000 genomes]
rs4852874	1.00[ASN][1000 genomes]
rs4852883	1.00[ASN][1000 genomes]
rs57270251	0.85[EUR][1000 genomes]
rs583119	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs587744	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs589547	1.00[ASN][1000 genomes]
rs590252	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs590345	1.00[ASN][1000 genomes]
rs598138	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs598496	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs620770	1.00[ASN][1000 genomes]
rs628432	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs630241	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs634586	1.00[ASN][1000 genomes]
rs638854	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs640610	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs641939	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs642652	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs647242	1.00[ASN][1000 genomes]
rs653220	1.00[ASN][1000 genomes]
rs6546759	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546760	1.00[ASN][1000 genomes]
rs6546764	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs659833	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs663218	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs666233	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs668586	1.00[ASN][1000 genomes]
rs6711265	1.00[ASN][1000 genomes]
rs6714312	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6714419	1.00[ASN][1000 genomes]
rs6714595	1.00[ASN][1000 genomes]
rs6737565	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6752122	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6758593	1.00[ASN][1000 genomes]
rs680495	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs689154	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7420588	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7420667	1.00[ASN][1000 genomes]
rs7558686	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7558919	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7563738	1.00[ASN][1000 genomes]
rs7568803	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7580952	1.00[ASN][1000 genomes]
rs7594350	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7595180	1.00[ASN][1000 genomes]
rs7595315	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7600273	1.00[ASN][1000 genomes]
rs9309464	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1005487	chr2:72464784-72819704	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv999179	chr2:72561463-72761103	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1008335	chr2:72561463-72819704	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv874264	chr2:72593243-72901170	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv2773	chr2:72603908-72649311	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72613800-72654000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:72619600-72640600	Weak transcription	Ovary	ovary
3	chr2:72628400-72648800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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