Variant report

Variant	rs6711265
Chromosome Location	chr2:72519728-72519729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:72518926..72520501-chr2:72530271..72532810,2	K562	blood:

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs1003672	0.84[EUR][1000 genomes]
rs10168145	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10173381	1.00[ASN][1000 genomes]
rs10194216	1.00[ASN][1000 genomes]
rs10205108	0.83[EUR][1000 genomes]
rs10207299	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10221769	0.82[EUR][1000 genomes]
rs11126366	1.00[ASN][1000 genomes]
rs11690734	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11694921	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11902025	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12052508	1.00[ASN][1000 genomes]
rs12992973	1.00[ASN][1000 genomes]
rs13390754	1.00[ASN][1000 genomes]
rs13432350	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1400581	1.00[ASN][1000 genomes]
rs1517185	1.00[ASN][1000 genomes]
rs1947118	1.00[ASN][1000 genomes]
rs2041564	0.85[AFR][1000 genomes]
rs2109961	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2203679	1.00[ASN][1000 genomes]
rs2420442	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2420444	1.00[ASN][1000 genomes]
rs2901144	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2901146	1.00[ASN][1000 genomes]
rs3115351	1.00[ASN][1000 genomes]
rs4852287	0.91[EUR][1000 genomes]
rs4852288	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4852873	1.00[ASN][1000 genomes]
rs4852874	1.00[ASN][1000 genomes]
rs583119	1.00[ASN][1000 genomes]
rs584522	1.00[ASN][1000 genomes]
rs587744	1.00[ASN][1000 genomes]
rs589547	1.00[ASN][1000 genomes]
rs590252	1.00[ASN][1000 genomes]
rs590345	1.00[ASN][1000 genomes]
rs598138	1.00[ASN][1000 genomes]
rs598496	1.00[ASN][1000 genomes]
rs620770	1.00[ASN][1000 genomes]
rs628432	1.00[ASN][1000 genomes]
rs630241	1.00[ASN][1000 genomes]
rs634586	1.00[ASN][1000 genomes]
rs638854	1.00[ASN][1000 genomes]
rs640610	1.00[ASN][1000 genomes]
rs641939	1.00[ASN][1000 genomes]
rs642652	1.00[ASN][1000 genomes]
rs647242	1.00[ASN][1000 genomes]
rs653220	1.00[ASN][1000 genomes]
rs6546752	0.84[EUR][1000 genomes]
rs6546756	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6546759	1.00[ASN][1000 genomes]
rs6546760	1.00[ASN][1000 genomes]
rs6546764	1.00[ASN][1000 genomes]
rs659833	1.00[ASN][1000 genomes]
rs663218	1.00[ASN][1000 genomes]
rs666233	1.00[ASN][1000 genomes]
rs668586	1.00[ASN][1000 genomes]
rs6709109	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6709114	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6714312	1.00[ASN][1000 genomes]
rs6714419	1.00[ASN][1000 genomes]
rs6714595	1.00[ASN][1000 genomes]
rs6722637	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6729863	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6737565	1.00[ASN][1000 genomes]
rs6742264	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6748607	0.85[AFR][1000 genomes]
rs6751276	0.85[AFR][1000 genomes]
rs6752122	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6753073	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6758462	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6758593	1.00[ASN][1000 genomes]
rs680495	1.00[ASN][1000 genomes]
rs689154	1.00[ASN][1000 genomes]
rs719118	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7420588	1.00[ASN][1000 genomes]
rs7420667	1.00[ASN][1000 genomes]
rs7558686	1.00[ASN][1000 genomes]
rs7558919	1.00[ASN][1000 genomes]
rs7559131	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7563738	1.00[ASN][1000 genomes]
rs7568803	1.00[ASN][1000 genomes]
rs7580952	1.00[ASN][1000 genomes]
rs7583271	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7594350	1.00[ASN][1000 genomes]
rs7595180	1.00[ASN][1000 genomes]
rs7595315	1.00[ASN][1000 genomes]
rs768042	0.85[AFR][1000 genomes]
rs768043	0.85[AFR][1000 genomes]
rs9309463	0.83[EUR][1000 genomes]
rs9309464	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1005487	chr2:72464784-72819704	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72517000-72520600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr2:72517400-72521000	Weak transcription	NHDF-Ad	bronchial
3	chr2:72517800-72520600	Enhancers	A549	lung
4	chr2:72518600-72520600	Weak transcription	Osteobl	bone
5	chr2:72518800-72520800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:72519200-72520600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:72519200-72520600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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