Variant report

Variant	rs768043
Chromosome Location	chr2:72476263-72476264
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs1000523	0.85[ASN][1000 genomes]
rs1003672	0.93[ASN][1000 genomes]
rs10178138	0.85[ASN][1000 genomes]
rs10178847	0.85[ASN][1000 genomes]
rs10181899	0.85[ASN][1000 genomes]
rs10190799	0.93[ASN][1000 genomes]
rs10192800	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10193543	0.85[ASN][1000 genomes]
rs10196589	0.93[ASN][1000 genomes]
rs10205108	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10207299	0.85[AFR][1000 genomes]
rs10209861	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10221767	0.85[ASN][1000 genomes]
rs10221769	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11126362	0.86[ASN][1000 genomes]
rs11126363	0.93[ASN][1000 genomes]
rs1123199	0.85[ASN][1000 genomes]
rs1159763	0.93[ASN][1000 genomes]
rs1159764	0.93[ASN][1000 genomes]
rs1159765	0.93[ASN][1000 genomes]
rs1159766	0.93[ASN][1000 genomes]
rs12151496	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12466026	0.85[ASN][1000 genomes]
rs12466112	0.85[ASN][1000 genomes]
rs13382986	0.85[ASN][1000 genomes]
rs13387630	0.85[ASN][1000 genomes]
rs13389524	0.85[ASN][1000 genomes]
rs13391463	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13392314	0.85[ASN][1000 genomes]
rs13395204	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13404369	0.93[ASN][1000 genomes]
rs13416674	0.93[ASN][1000 genomes]
rs13417114	0.93[ASN][1000 genomes]
rs13418637	0.93[ASN][1000 genomes]
rs13423761	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13430254	0.85[ASN][1000 genomes]
rs13430651	0.85[ASN][1000 genomes]
rs13432350	0.88[AFR][1000 genomes]
rs17673916	0.85[ASN][1000 genomes]
rs17724205	0.85[ASN][1000 genomes]
rs17724860	0.85[ASN][1000 genomes]
rs17725024	0.85[ASN][1000 genomes]
rs1860852	0.80[ASN][1000 genomes]
rs194235	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs194239	0.82[ASN][1000 genomes]
rs194242	0.86[ASN][1000 genomes]
rs194243	0.86[ASN][1000 genomes]
rs2041563	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2041564	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2080044	0.85[ASN][1000 genomes]
rs2109963	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2159823	0.85[ASN][1000 genomes]
rs2192014	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2192015	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs28278	0.86[ASN][1000 genomes]
rs34837782	0.80[ASN][1000 genomes]
rs41388	0.86[ASN][1000 genomes]
rs41389	0.86[ASN][1000 genomes]
rs41390	0.86[ASN][1000 genomes]
rs41391	0.86[ASN][1000 genomes]
rs41392	0.93[ASN][1000 genomes]
rs41393	0.86[ASN][1000 genomes]
rs41394	0.86[ASN][1000 genomes]
rs41395	0.93[ASN][1000 genomes]
rs41396	0.86[ASN][1000 genomes]
rs41397	0.80[ASN][1000 genomes]
rs41398	0.86[ASN][1000 genomes]
rs41400	0.86[ASN][1000 genomes]
rs41401	0.93[ASN][1000 genomes]
rs41402	0.93[ASN][1000 genomes]
rs41403	0.86[ASN][1000 genomes]
rs41405	0.86[ASN][1000 genomes]
rs41406	0.93[ASN][1000 genomes]
rs41407	0.86[ASN][1000 genomes]
rs41410	0.87[ASN][1000 genomes]
rs41411	0.87[ASN][1000 genomes]
rs41412	0.80[ASN][1000 genomes]
rs41413	0.87[ASN][1000 genomes]
rs41414	0.80[ASN][1000 genomes]
rs41418	0.80[ASN][1000 genomes]
rs41419	0.80[ASN][1000 genomes]
rs4852285	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852859	0.85[ASN][1000 genomes]
rs4852860	0.93[ASN][1000 genomes]
rs4852861	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852862	0.93[ASN][1000 genomes]
rs55764675	0.85[ASN][1000 genomes]
rs55877105	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55970539	0.85[ASN][1000 genomes]
rs56299443	0.85[ASN][1000 genomes]
rs62147573	0.85[ASN][1000 genomes]
rs62147579	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147589	0.85[ASN][1000 genomes]
rs62147626	0.85[ASN][1000 genomes]
rs62147629	0.85[ASN][1000 genomes]
rs62147636	0.85[ASN][1000 genomes]
rs6546750	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6546752	0.93[ASN][1000 genomes]
rs6546753	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546755	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546756	0.92[AFR][1000 genomes]
rs6711265	0.85[AFR][1000 genomes]
rs6719255	0.85[ASN][1000 genomes]
rs6748607	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6751276	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6760895	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7565922	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs768042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9309463	0.93[ASN][1000 genomes]
rs9679148	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1005487	chr2:72464784-72819704	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72465800-72490400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:72476000-72477400	Weak transcription	Fetal Kidney	kidney

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