Variant report

Variant	rs10190799
Chromosome Location	chr2:72392588-72392589
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs1003672	0.86[ASN][1000 genomes]
rs10196589	0.86[ASN][1000 genomes]
rs10205108	0.86[ASN][1000 genomes]
rs10209861	0.93[ASN][1000 genomes]
rs10221769	0.86[ASN][1000 genomes]
rs10865390	0.86[ASN][1000 genomes]
rs11126362	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11126363	0.86[ASN][1000 genomes]
rs1159763	0.86[ASN][1000 genomes]
rs1159764	0.86[ASN][1000 genomes]
rs1159765	0.86[ASN][1000 genomes]
rs1159766	0.86[ASN][1000 genomes]
rs11681809	0.86[ASN][1000 genomes]
rs13391463	0.93[ASN][1000 genomes]
rs13395204	0.93[ASN][1000 genomes]
rs13404369	0.86[ASN][1000 genomes]
rs13416674	0.86[ASN][1000 genomes]
rs13417114	0.86[ASN][1000 genomes]
rs13418637	0.86[ASN][1000 genomes]
rs13423761	0.93[ASN][1000 genomes]
rs194235	1.00[ASN][1000 genomes]
rs194236	0.81[ASN][1000 genomes]
rs194237	0.86[ASN][1000 genomes]
rs194238	0.86[ASN][1000 genomes]
rs194239	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs194240	0.81[ASN][1000 genomes]
rs194241	0.86[ASN][1000 genomes]
rs194242	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs194243	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2041563	0.93[ASN][1000 genomes]
rs2041564	0.93[ASN][1000 genomes]
rs2109963	0.93[ASN][1000 genomes]
rs28278	0.93[ASN][1000 genomes]
rs41387	0.86[ASN][1000 genomes]
rs41388	0.93[ASN][1000 genomes]
rs41389	0.93[ASN][1000 genomes]
rs41390	0.93[ASN][1000 genomes]
rs41391	0.93[ASN][1000 genomes]
rs41392	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41393	0.93[ASN][1000 genomes]
rs41394	0.93[ASN][1000 genomes]
rs41395	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41396	0.93[ASN][1000 genomes]
rs41397	0.87[ASN][1000 genomes]
rs41398	0.93[ASN][1000 genomes]
rs41399	0.86[ASN][1000 genomes]
rs41400	0.93[ASN][1000 genomes]
rs41401	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41402	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41403	0.93[ASN][1000 genomes]
rs41405	0.93[ASN][1000 genomes]
rs41406	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41407	0.93[ASN][1000 genomes]
rs41408	0.86[ASN][1000 genomes]
rs41409	0.80[ASN][1000 genomes]
rs41410	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs41411	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs41412	0.87[ASN][1000 genomes]
rs41413	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs41414	0.87[ASN][1000 genomes]
rs41415	0.80[ASN][1000 genomes]
rs41416	0.80[ASN][1000 genomes]
rs41417	0.80[ASN][1000 genomes]
rs41418	0.87[ASN][1000 genomes]
rs41419	0.87[ASN][1000 genomes]
rs41420	0.80[ASN][1000 genomes]
rs4852285	0.93[ASN][1000 genomes]
rs4852860	0.86[ASN][1000 genomes]
rs4852861	0.93[ASN][1000 genomes]
rs4852862	0.86[ASN][1000 genomes]
rs55877105	0.93[ASN][1000 genomes]
rs62147579	0.93[ASN][1000 genomes]
rs6546750	0.81[ASN][1000 genomes]
rs6546752	0.86[ASN][1000 genomes]
rs6546753	0.93[ASN][1000 genomes]
rs6546755	0.93[ASN][1000 genomes]
rs6748607	0.93[ASN][1000 genomes]
rs6751276	0.93[ASN][1000 genomes]
rs6760895	0.93[ASN][1000 genomes]
rs7565922	0.93[ASN][1000 genomes]
rs768042	0.93[ASN][1000 genomes]
rs768043	0.93[ASN][1000 genomes]
rs9309463	0.86[ASN][1000 genomes]
rs9679148	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72391000-72393000	Enhancers	A549	lung
2	chr2:72392400-72394200	Enhancers	Hela-S3	cervix

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