Variant report

Variant	rs10865390
Chromosome Location	chr2:72392754-72392755
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs1000523	0.92[ASN][1000 genomes]
rs1003672	0.85[ASN][1000 genomes]
rs10178138	0.92[ASN][1000 genomes]
rs10178847	0.92[ASN][1000 genomes]
rs10181899	0.92[ASN][1000 genomes]
rs10190799	0.86[ASN][1000 genomes]
rs10193543	0.92[ASN][1000 genomes]
rs10196589	0.85[ASN][1000 genomes]
rs10205108	0.85[ASN][1000 genomes]
rs10221767	0.92[ASN][1000 genomes]
rs10221769	0.85[ASN][1000 genomes]
rs11126362	0.93[ASN][1000 genomes]
rs11126363	0.85[ASN][1000 genomes]
rs1123199	0.92[ASN][1000 genomes]
rs1159763	0.85[ASN][1000 genomes]
rs1159764	0.85[ASN][1000 genomes]
rs1159765	0.85[ASN][1000 genomes]
rs1159766	0.85[ASN][1000 genomes]
rs11681809	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12466026	0.92[ASN][1000 genomes]
rs12466112	0.92[ASN][1000 genomes]
rs13382986	0.92[ASN][1000 genomes]
rs13387630	0.92[ASN][1000 genomes]
rs13389524	0.92[ASN][1000 genomes]
rs13392314	0.92[ASN][1000 genomes]
rs13404369	0.85[ASN][1000 genomes]
rs13416674	0.85[ASN][1000 genomes]
rs13417114	0.85[ASN][1000 genomes]
rs13418637	0.85[ASN][1000 genomes]
rs13430254	0.92[ASN][1000 genomes]
rs13430651	0.92[ASN][1000 genomes]
rs17673916	0.92[ASN][1000 genomes]
rs17724205	0.92[ASN][1000 genomes]
rs17724860	0.92[ASN][1000 genomes]
rs17725024	0.92[ASN][1000 genomes]
rs194235	0.86[ASN][1000 genomes]
rs194236	0.81[ASN][1000 genomes]
rs194237	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs194238	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs194240	0.81[ASN][1000 genomes]
rs194241	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs194242	0.93[ASN][1000 genomes]
rs194243	0.93[ASN][1000 genomes]
rs2080044	0.92[ASN][1000 genomes]
rs2159823	0.92[ASN][1000 genomes]
rs28278	0.93[ASN][1000 genomes]
rs41387	1.00[ASN][1000 genomes]
rs41388	0.93[ASN][1000 genomes]
rs41389	0.93[ASN][1000 genomes]
rs41390	0.93[ASN][1000 genomes]
rs41391	0.93[ASN][1000 genomes]
rs41392	0.86[ASN][1000 genomes]
rs41393	0.93[ASN][1000 genomes]
rs41394	0.93[ASN][1000 genomes]
rs41395	0.86[ASN][1000 genomes]
rs41396	0.93[ASN][1000 genomes]
rs41397	0.86[ASN][1000 genomes]
rs41398	0.93[ASN][1000 genomes]
rs41399	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41400	0.93[ASN][1000 genomes]
rs41401	0.86[ASN][1000 genomes]
rs41402	0.86[ASN][1000 genomes]
rs41403	0.93[ASN][1000 genomes]
rs41405	0.93[ASN][1000 genomes]
rs41406	0.86[ASN][1000 genomes]
rs41407	0.93[ASN][1000 genomes]
rs41408	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41409	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41410	0.81[ASN][1000 genomes]
rs41411	0.81[ASN][1000 genomes]
rs41412	0.86[ASN][1000 genomes]
rs41413	0.81[ASN][1000 genomes]
rs41414	0.86[ASN][1000 genomes]
rs41415	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41416	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41417	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41418	0.86[ASN][1000 genomes]
rs41419	0.86[ASN][1000 genomes]
rs41420	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4852859	0.92[ASN][1000 genomes]
rs4852860	0.85[ASN][1000 genomes]
rs4852862	0.85[ASN][1000 genomes]
rs55764675	0.92[ASN][1000 genomes]
rs55970539	0.92[ASN][1000 genomes]
rs56299443	0.92[ASN][1000 genomes]
rs62147573	0.92[ASN][1000 genomes]
rs62147589	0.92[ASN][1000 genomes]
rs62147626	0.92[ASN][1000 genomes]
rs62147629	0.92[ASN][1000 genomes]
rs62147636	0.92[ASN][1000 genomes]
rs6546752	0.85[ASN][1000 genomes]
rs6719255	0.92[ASN][1000 genomes]
rs9309463	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10865390	CYP26B1	cis	Whole Blood	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72391000-72393000	Enhancers	A549	lung
2	chr2:72392400-72394200	Enhancers	Hela-S3	cervix
3	chr2:72392600-72393600	Enhancers	NHEK	skin

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