The 2.0 version of rSNPBase

Variant report

Variant rs41409
Chromosome Location chr2:72409750-72409751
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:72393600-72414800 Weak transcription NHEK skin
2 chr2:72394400-72409800 Weak transcription A549 lung
3 chr2:72400800-72414000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
4 chr2:72401600-72411600 Weak transcription H1 Cell Line embryonic stem cell
5 chr2:72401600-72414000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
6 chr2:72401600-72415200 Weak transcription H9 Cell Line embryonic stem cell
7 chr2:72402000-72410400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
8 chr2:72402200-72410400 Weak transcription Psoas Muscle Psoas
9 chr2:72402200-72412200 Weak transcription Primary T helper naive cells fromperipheralblood blood
10 chr2:72402600-72410400 Weak transcription Small Intestine intestine
11 chr2:72403000-72410200 Weak transcription Fetal Kidney kidney
12 chr2:72403400-72414200 Weak transcription Cortex derived primary cultured neurospheres brain
13 chr2:72405400-72414000 Weak transcription Fetal Intestine Small intestine
14 chr2:72405600-72411200 Weak transcription HSMMtube muscle
15 chr2:72405600-72414000 Weak transcription Lung lung
16 chr2:72405800-72418600 Weak transcription Brain Angular Gyrus brain
17 chr2:72406000-72412400 Weak transcription Liver Liver
18 chr2:72406200-72409800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
19 chr2:72406200-72412200 Weak transcription Fetal Heart heart
20 chr2:72406400-72410200 Weak transcription Fetal Muscle Leg muscle
21 chr2:72406400-72410400 Weak transcription Fetal Intestine Large intestine
22 chr2:72406400-72412000 Weak transcription Duodenum Smooth Muscle Duodenum
23 chr2:72406400-72425800 Weak transcription Brain Anterior Caudate brain
24 chr2:72406600-72410400 Weak transcription Esophagus oesophagus
25 chr2:72406600-72411800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
26 chr2:72406600-72412400 Weak transcription Gastric stomach
27 chr2:72406600-72414000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
28 chr2:72406600-72414000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
29 chr2:72406600-72414000 Weak transcription Placenta Placenta
30 chr2:72406600-72414200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
31 chr2:72406600-72414600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
32 chr2:72406600-72415800 Weak transcription Placenta Amnion Placenta Amnion
33 chr2:72406800-72409800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
34 chr2:72406800-72410800 Weak transcription Sigmoid Colon Sigmoid Colon
35 chr2:72406800-72414000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr2:72406800-72414400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr2:72406800-72418600 Weak transcription Brain Cingulate Gyrus brain
38 chr2:72406800-72419800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
39 chr2:72407000-72412200 Weak transcription Brain Substantia Nigra brain
40 chr2:72407000-72412200 Weak transcription Fetal Lung lung
41 chr2:72407000-72412400 Weak transcription Brain Hippocampus Middle brain
42 chr2:72407000-72412600 Weak transcription Fetal Muscle Trunk muscle
43 chr2:72407000-72414400 Weak transcription Fetal Adrenal Gland Adrenal Gland
44 chr2:72407000-72414600 Weak transcription Brain Germinal Matrix brain
45 chr2:72407000-72415000 Weak transcription Skeletal Muscle Male skeletal muscle
46 chr2:72407200-72412400 Weak transcription Aorta Aorta
47 chr2:72407200-72415800 Weak transcription Stomach Smooth Muscle stomach
48 chr2:72407200-72425200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
49 chr2:72407400-72413000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
50 chr2:72407600-72409800 Weak transcription Left Ventricle heart

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Last update: Aug 31, 2015