The 2.0 version of rSNPBase

Variant report

Variant rs41411
Chromosome Location chr2:72409116-72409117
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:71 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:72393600-72414800 Weak transcription NHEK skin
2 chr2:72394400-72409800 Weak transcription A549 lung
3 chr2:72400800-72414000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
4 chr2:72401200-72409600 Weak transcription Spleen Spleen
5 chr2:72401600-72409400 Weak transcription ES-I3 Cell Line embryonic stem cell
6 chr2:72401600-72411600 Weak transcription H1 Cell Line embryonic stem cell
7 chr2:72401600-72414000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
8 chr2:72401600-72415200 Weak transcription H9 Cell Line embryonic stem cell
9 chr2:72402000-72410400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
10 chr2:72402200-72410400 Weak transcription Psoas Muscle Psoas
11 chr2:72402200-72412200 Weak transcription Primary T helper naive cells fromperipheralblood blood
12 chr2:72402600-72410400 Weak transcription Small Intestine intestine
13 chr2:72403000-72410200 Weak transcription Fetal Kidney kidney
14 chr2:72403400-72414200 Weak transcription Cortex derived primary cultured neurospheres brain
15 chr2:72405400-72409600 Weak transcription Pancreas Pancrea
16 chr2:72405400-72414000 Weak transcription Fetal Intestine Small intestine
17 chr2:72405600-72411200 Weak transcription HSMMtube muscle
18 chr2:72405600-72414000 Weak transcription Lung lung
19 chr2:72405800-72418600 Weak transcription Brain Angular Gyrus brain
20 chr2:72406000-72412400 Weak transcription Liver Liver
21 chr2:72406200-72409800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
22 chr2:72406200-72412200 Weak transcription Fetal Heart heart
23 chr2:72406400-72410200 Weak transcription Fetal Muscle Leg muscle
24 chr2:72406400-72410400 Weak transcription Fetal Intestine Large intestine
25 chr2:72406400-72412000 Weak transcription Duodenum Smooth Muscle Duodenum
26 chr2:72406400-72425800 Weak transcription Brain Anterior Caudate brain
27 chr2:72406600-72409200 Weak transcription Duodenum Mucosa Duodenum
28 chr2:72406600-72409600 Weak transcription Ovary ovary
29 chr2:72406600-72410400 Weak transcription Esophagus oesophagus
30 chr2:72406600-72411800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
31 chr2:72406600-72412400 Weak transcription Gastric stomach
32 chr2:72406600-72414000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
33 chr2:72406600-72414000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
34 chr2:72406600-72414000 Weak transcription Placenta Placenta
35 chr2:72406600-72414200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
36 chr2:72406600-72414600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
37 chr2:72406600-72415800 Weak transcription Placenta Amnion Placenta Amnion
38 chr2:72406800-72409800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
39 chr2:72406800-72410800 Weak transcription Sigmoid Colon Sigmoid Colon
40 chr2:72406800-72414000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
41 chr2:72406800-72414400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
42 chr2:72406800-72418600 Weak transcription Brain Cingulate Gyrus brain
43 chr2:72406800-72419800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
44 chr2:72407000-72409400 Weak transcription Right Ventricle heart
45 chr2:72407000-72412200 Weak transcription Brain Substantia Nigra brain
46 chr2:72407000-72412200 Weak transcription Fetal Lung lung
47 chr2:72407000-72412400 Weak transcription Brain Hippocampus Middle brain
48 chr2:72407000-72412600 Weak transcription Fetal Muscle Trunk muscle
49 chr2:72407000-72414400 Weak transcription Fetal Adrenal Gland Adrenal Gland
50 chr2:72407000-72414600 Weak transcription Brain Germinal Matrix brain

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Last update: Aug 31, 2015