Variant report

Variant	rs13391463
Chromosome Location	chr2:72433199-72433200
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:72431398..72433535-chr2:72436487..72438674,2	MCF-7	breast:
2	chr2:72432812..72434707-chr2:72436307..72438652,2	MCF-7	breast:

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs1000523	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs1003672	0.93[ASN][1000 genomes]
rs10175915	1.00[CHB][hapmap]
rs10178138	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs10178847	0.85[ASN][1000 genomes]
rs10181899	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs10182075	0.92[YRI][hapmap]
rs10186006	0.91[YRI][hapmap]
rs10190799	0.93[ASN][1000 genomes]
rs10192800	0.80[CEU][hapmap];0.85[EUR][1000 genomes]
rs10193543	0.85[ASN][1000 genomes]
rs10196589	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs10205108	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs10209861	0.80[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10221767	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs10221769	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs11126362	0.86[ASN][1000 genomes]
rs11126363	0.93[ASN][1000 genomes]
rs1123199	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs1159763	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs1159764	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs1159765	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs1159766	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs12151496	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12466026	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs12466112	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs13382986	0.85[ASN][1000 genomes]
rs13387630	0.85[ASN][1000 genomes]
rs13389524	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs13392314	0.85[ASN][1000 genomes]
rs13395204	0.85[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13404369	0.93[ASN][1000 genomes]
rs13416674	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs13417114	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs13418637	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs13423761	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13425458	0.91[YRI][hapmap]
rs13430254	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs13430651	0.85[ASN][1000 genomes]
rs17673916	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs17724205	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs17724860	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs17725024	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs1860852	0.80[ASN][1000 genomes]
rs194235	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs194239	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs194242	0.86[ASN][1000 genomes]
rs194243	0.86[ASN][1000 genomes]
rs2041563	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2041564	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2080044	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs2109963	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2159823	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs2192014	0.80[CEU][hapmap];0.85[EUR][1000 genomes]
rs28278	0.86[ASN][1000 genomes]
rs34837782	0.80[ASN][1000 genomes]
rs41386	1.00[CHB][hapmap]
rs41387	1.00[CHB][hapmap]
rs41388	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs41389	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs41390	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs41391	0.86[ASN][1000 genomes]
rs41392	0.84[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41393	0.86[ASN][1000 genomes]
rs41394	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs41395	0.84[CEU][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41396	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs41397	0.80[ASN][1000 genomes]
rs41398	0.86[ASN][1000 genomes]
rs41399	1.00[CHB][hapmap]
rs41400	0.86[ASN][1000 genomes]
rs41401	0.84[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41402	0.84[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41403	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs41405	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs41406	0.83[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41407	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs41410	0.84[CEU][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs41411	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs41412	0.80[ASN][1000 genomes]
rs41413	0.84[CEU][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs41414	0.80[ASN][1000 genomes]
rs41418	0.80[ASN][1000 genomes]
rs41419	0.80[ASN][1000 genomes]
rs4852285	0.90[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852859	0.85[ASN][1000 genomes]
rs4852860	0.93[ASN][1000 genomes]
rs4852861	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852862	0.93[ASN][1000 genomes]
rs55764675	0.85[ASN][1000 genomes]
rs55877105	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55970539	0.85[ASN][1000 genomes]
rs56299443	0.85[ASN][1000 genomes]
rs62147573	0.85[ASN][1000 genomes]
rs62147579	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147589	0.85[ASN][1000 genomes]
rs62147626	0.85[ASN][1000 genomes]
rs62147629	0.85[ASN][1000 genomes]
rs62147636	0.85[ASN][1000 genomes]
rs6546750	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6546752	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs6546753	0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546755	0.80[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6719255	0.85[ASN][1000 genomes]
rs6748607	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6751276	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6760895	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7565922	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs768042	0.80[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs768043	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9309463	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs9679148	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72426800-72437600	Weak transcription	NH-A	brain
2	chr2:72429000-72433200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr2:72429200-72433600	Enhancers	Fetal Intestine Large	intestine
4	chr2:72429800-72433200	Enhancers	Right Ventricle	heart
5	chr2:72430000-72433200	Enhancers	Ovary	ovary
6	chr2:72430200-72433400	Enhancers	Brain Substantia Nigra	brain
7	chr2:72430400-72433200	Enhancers	Colon Smooth Muscle	Colon
8	chr2:72430400-72433600	Enhancers	Fetal Stomach	stomach
9	chr2:72430600-72433400	Enhancers	Brain Anterior Caudate	brain
10	chr2:72430800-72433200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:72430800-72433200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:72430800-72433200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr2:72430800-72433200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr2:72430800-72433200	Enhancers	Fetal Kidney	kidney
15	chr2:72430800-72433200	Enhancers	Fetal Muscle Leg	muscle
16	chr2:72430800-72433200	Enhancers	Right Atrium	heart
17	chr2:72430800-72433200	Enhancers	Stomach Mucosa	stomach
18	chr2:72430800-72433400	Enhancers	Fetal Intestine Small	intestine
19	chr2:72430800-72433600	Enhancers	Duodenum Mucosa	Duodenum
20	chr2:72430800-72433600	Enhancers	Small Intestine	intestine
21	chr2:72431000-72433200	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr2:72431000-72433200	Enhancers	Left Ventricle	heart
23	chr2:72431000-72433600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr2:72431200-72433200	Enhancers	Adipose Nuclei	Adipose
25	chr2:72431200-72433200	Enhancers	Brain Angular Gyrus	brain
26	chr2:72431200-72433400	Enhancers	Fetal Heart	heart
27	chr2:72431200-72433400	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr2:72431400-72433200	Enhancers	Brain Cingulate Gyrus	brain
29	chr2:72431400-72433200	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr2:72431400-72433200	Enhancers	Lung	lung
31	chr2:72431400-72433800	Enhancers	Brain Hippocampus Middle	brain
32	chr2:72432200-72433200	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr2:72432200-72433200	Enhancers	A549	lung
34	chr2:72432200-72433800	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr2:72432800-72437600	Weak transcription	Colonic Mucosa	Colon
36	chr2:72432800-72437600	Weak transcription	Esophagus	oesophagus
37	chr2:72432800-72437600	Weak transcription	Gastric	stomach
38	chr2:72432800-72437800	Weak transcription	Osteobl	bone
39	chr2:72432800-72438400	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr2:72432800-72438400	Weak transcription	NHDF-Ad	bronchial
41	chr2:72432800-72441600	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr2:72432800-72456600	Weak transcription	Psoas Muscle	Psoas
43	chr2:72433000-72433200	Enhancers	HSMMtube	muscle
44	chr2:72433000-72433600	Enhancers	HepG2	liver
45	chr2:72433000-72441600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr2:72433000-72460600	Weak transcription	Pancreas	Pancrea

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