Variant report

Variant	rs12151496
Chromosome Location	chr2:72452266-72452267
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10192800	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10196589	0.82[AMR][1000 genomes]
rs10209861	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11126363	0.82[AMR][1000 genomes]
rs1159763	0.84[AMR][1000 genomes]
rs1159764	0.84[AMR][1000 genomes]
rs1159765	0.85[AMR][1000 genomes]
rs1159766	0.84[AMR][1000 genomes]
rs13391463	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13395204	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13418637	0.84[AMR][1000 genomes]
rs13423761	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1860852	0.80[ASN][1000 genomes]
rs194235	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs194239	0.82[ASN][1000 genomes]
rs2041563	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2041564	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2109963	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2192014	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34837782	0.80[ASN][1000 genomes]
rs4852285	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4852861	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55877105	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62147579	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6546750	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6546753	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6546755	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6748607	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6751276	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6760895	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7565922	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs768042	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs768043	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9309463	0.81[AMR][1000 genomes]
rs9679148	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72432800-72456600	Weak transcription	Psoas Muscle	Psoas
2	chr2:72433000-72460600	Weak transcription	Pancreas	Pancrea
3	chr2:72433200-72466000	Weak transcription	Right Ventricle	heart
4	chr2:72433200-72468600	Weak transcription	Right Atrium	heart
5	chr2:72441000-72462800	Weak transcription	Left Ventricle	heart
6	chr2:72447800-72456400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr2:72447800-72457000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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