Variant report

Variant	rs9679148
Chromosome Location	chr2:72492953-72492954
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1003672	0.81[ASN][1000 genomes]
rs10190799	0.81[ASN][1000 genomes]
rs10192800	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10196589	0.81[ASN][1000 genomes]
rs10205108	0.81[ASN][1000 genomes]
rs10209861	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10221769	0.81[ASN][1000 genomes]
rs11126363	0.81[ASN][1000 genomes]
rs1159763	0.81[ASN][1000 genomes]
rs1159764	0.81[ASN][1000 genomes]
rs1159765	0.81[ASN][1000 genomes]
rs1159766	0.81[ASN][1000 genomes]
rs12151496	0.91[EUR][1000 genomes]
rs13391463	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13395204	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13404369	0.81[ASN][1000 genomes]
rs13416674	0.81[ASN][1000 genomes]
rs13417114	0.81[ASN][1000 genomes]
rs13418637	0.81[ASN][1000 genomes]
rs13423761	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs194235	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2041563	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2041564	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2109963	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2192014	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs41392	0.81[ASN][1000 genomes]
rs41395	0.81[ASN][1000 genomes]
rs41401	0.81[ASN][1000 genomes]
rs41402	0.81[ASN][1000 genomes]
rs41406	0.81[ASN][1000 genomes]
rs4852285	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4852860	0.81[ASN][1000 genomes]
rs4852861	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4852862	0.81[ASN][1000 genomes]
rs55877105	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62147579	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6546750	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6546752	0.81[ASN][1000 genomes]
rs6546753	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6546755	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6748607	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6751276	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6760895	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7565922	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs768042	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs768043	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9309463	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1005487	chr2:72464784-72819704	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72485200-72501800	Weak transcription	HSMMtube	muscle
2	chr2:72488200-72496600	Weak transcription	Psoas Muscle	Psoas
3	chr2:72489200-72508200	Weak transcription	Aorta	Aorta
4	chr2:72490400-72495800	Weak transcription	Pancreas	Pancrea
5	chr2:72490600-72497200	Weak transcription	Fetal Muscle Leg	muscle
6	chr2:72491200-72495800	Weak transcription	Left Ventricle	heart
7	chr2:72491200-72497000	Weak transcription	Right Atrium	heart
8	chr2:72491200-72502200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:72491400-72495800	Weak transcription	Right Ventricle	heart
10	chr2:72491400-72496400	Weak transcription	Fetal Heart	heart
11	chr2:72492200-72498200	Weak transcription	Colon Smooth Muscle	Colon
12	chr2:72492200-72498400	Weak transcription	Brain Angular Gyrus	brain

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