Variant report

Variant	rs1003672
Chromosome Location	chr2:72496083-72496084
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:72494142..72496291-chr2:72497712..72499384,2	MCF-7	breast:

Extended variants
information (count: 135 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs1000523	0.92[ASN][1000 genomes]
rs10168145	0.88[EUR][1000 genomes]
rs10178138	0.92[ASN][1000 genomes]
rs10178847	0.92[ASN][1000 genomes]
rs10181899	0.92[ASN][1000 genomes]
rs10190799	0.86[ASN][1000 genomes]
rs10193543	0.92[ASN][1000 genomes]
rs10196589	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10205108	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207299	0.89[EUR][1000 genomes]
rs10209861	0.93[ASN][1000 genomes]
rs10221767	0.92[ASN][1000 genomes]
rs10221769	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10865390	0.85[ASN][1000 genomes]
rs11126362	0.93[ASN][1000 genomes]
rs11126363	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1123199	0.92[ASN][1000 genomes]
rs1159763	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1159764	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1159765	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1159766	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11681809	0.85[ASN][1000 genomes]
rs11690734	0.89[EUR][1000 genomes]
rs11694921	0.89[EUR][1000 genomes]
rs11902025	0.89[EUR][1000 genomes]
rs12466026	0.92[ASN][1000 genomes]
rs12466112	0.92[ASN][1000 genomes]
rs13382986	0.92[ASN][1000 genomes]
rs13387630	0.92[ASN][1000 genomes]
rs13389524	0.92[ASN][1000 genomes]
rs13391463	0.93[ASN][1000 genomes]
rs13392314	0.92[ASN][1000 genomes]
rs13395204	0.93[ASN][1000 genomes]
rs13404369	0.85[ASN][1000 genomes]
rs13416674	0.85[ASN][1000 genomes]
rs13417114	0.85[ASN][1000 genomes]
rs13418637	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13423761	0.93[ASN][1000 genomes]
rs13430254	0.92[ASN][1000 genomes]
rs13430651	0.92[ASN][1000 genomes]
rs13432350	0.88[EUR][1000 genomes]
rs17673916	0.92[ASN][1000 genomes]
rs17724205	0.92[ASN][1000 genomes]
rs17724860	0.92[ASN][1000 genomes]
rs17725024	0.92[ASN][1000 genomes]
rs1860852	0.86[ASN][1000 genomes]
rs194235	0.86[ASN][1000 genomes]
rs194236	0.81[ASN][1000 genomes]
rs194237	0.85[ASN][1000 genomes]
rs194238	0.85[ASN][1000 genomes]
rs194240	0.81[ASN][1000 genomes]
rs194241	0.85[ASN][1000 genomes]
rs194242	0.93[ASN][1000 genomes]
rs194243	0.93[ASN][1000 genomes]
rs2041563	0.93[ASN][1000 genomes]
rs2041564	0.93[ASN][1000 genomes]
rs2080044	0.92[ASN][1000 genomes]
rs2109961	0.89[EUR][1000 genomes]
rs2109963	0.93[ASN][1000 genomes]
rs2159823	0.92[ASN][1000 genomes]
rs2420442	0.92[EUR][1000 genomes]
rs28278	0.93[ASN][1000 genomes]
rs2901144	0.92[EUR][1000 genomes]
rs34837782	0.86[ASN][1000 genomes]
rs41387	0.85[ASN][1000 genomes]
rs41388	0.93[ASN][1000 genomes]
rs41389	0.93[ASN][1000 genomes]
rs41390	0.93[ASN][1000 genomes]
rs41391	0.93[ASN][1000 genomes]
rs41392	0.86[ASN][1000 genomes]
rs41393	0.93[ASN][1000 genomes]
rs41394	0.93[ASN][1000 genomes]
rs41395	0.86[ASN][1000 genomes]
rs41397	0.86[ASN][1000 genomes]
rs41398	0.93[ASN][1000 genomes]
rs41399	0.85[ASN][1000 genomes]
rs41400	0.93[ASN][1000 genomes]
rs41401	0.86[ASN][1000 genomes]
rs41402	0.86[ASN][1000 genomes]
rs41403	0.93[ASN][1000 genomes]
rs41405	0.93[ASN][1000 genomes]
rs41406	0.86[ASN][1000 genomes]
rs41407	0.93[ASN][1000 genomes]
rs41408	0.85[ASN][1000 genomes]
rs41410	0.81[ASN][1000 genomes]
rs41411	0.81[ASN][1000 genomes]
rs41412	0.86[ASN][1000 genomes]
rs41413	0.81[ASN][1000 genomes]
rs41414	0.86[ASN][1000 genomes]
rs41418	0.86[ASN][1000 genomes]
rs41419	0.86[ASN][1000 genomes]
rs4852285	0.93[ASN][1000 genomes]
rs4852287	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4852288	0.90[EUR][1000 genomes]
rs4852859	0.92[ASN][1000 genomes]
rs4852860	0.85[ASN][1000 genomes]
rs4852861	0.93[ASN][1000 genomes]
rs4852862	0.85[ASN][1000 genomes]
rs55764675	0.92[ASN][1000 genomes]
rs55877105	0.93[ASN][1000 genomes]
rs55970539	0.92[ASN][1000 genomes]
rs56299443	0.92[ASN][1000 genomes]
rs62147573	0.92[ASN][1000 genomes]
rs62147579	0.93[ASN][1000 genomes]
rs62147589	0.92[ASN][1000 genomes]
rs62147626	0.92[ASN][1000 genomes]
rs62147629	0.92[ASN][1000 genomes]
rs62147636	0.92[ASN][1000 genomes]
rs6546750	0.81[ASN][1000 genomes]
rs6546752	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546753	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6546755	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6546756	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6709109	0.87[EUR][1000 genomes]
rs6709114	0.82[EUR][1000 genomes]
rs6711265	0.84[EUR][1000 genomes]
rs6719255	0.92[ASN][1000 genomes]
rs6722637	0.86[EUR][1000 genomes]
rs6729863	0.89[EUR][1000 genomes]
rs6742264	0.92[EUR][1000 genomes]
rs6748607	0.93[ASN][1000 genomes]
rs6751276	0.93[ASN][1000 genomes]
rs6753073	0.86[EUR][1000 genomes]
rs6758462	0.89[EUR][1000 genomes]
rs6760895	0.93[ASN][1000 genomes]
rs719118	0.89[EUR][1000 genomes]
rs7559131	0.87[EUR][1000 genomes]
rs7565922	0.93[ASN][1000 genomes]
rs7583271	0.89[EUR][1000 genomes]
rs768042	0.93[ASN][1000 genomes]
rs768043	0.93[ASN][1000 genomes]
rs9309463	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9679148	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1005487	chr2:72464784-72819704	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72485200-72501800	Weak transcription	HSMMtube	muscle
2	chr2:72488200-72496600	Weak transcription	Psoas Muscle	Psoas
3	chr2:72489200-72508200	Weak transcription	Aorta	Aorta
4	chr2:72490600-72497200	Weak transcription	Fetal Muscle Leg	muscle
5	chr2:72491200-72497000	Weak transcription	Right Atrium	heart
6	chr2:72491200-72502200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr2:72491400-72496400	Weak transcription	Fetal Heart	heart
8	chr2:72492200-72498200	Weak transcription	Colon Smooth Muscle	Colon
9	chr2:72492200-72498400	Weak transcription	Brain Angular Gyrus	brain
10	chr2:72495800-72496200	Enhancers	Right Ventricle	heart
11	chr2:72495800-72497400	Enhancers	Esophagus	oesophagus
12	chr2:72496000-72496400	Weak transcription	Left Ventricle	heart
13	chr2:72496000-72496600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr2:72496000-72496600	Weak transcription	Pancreas	Pancrea
15	chr2:72496000-72497000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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