Variant report

Variant	rs6709114
Chromosome Location	chr2:72510392-72510393
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1003672	0.82[EUR][1000 genomes]
rs10168145	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10204415	1.00[ASN][1000 genomes]
rs10205108	0.81[EUR][1000 genomes]
rs10207299	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11690734	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11694921	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11902025	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13409641	1.00[ASN][1000 genomes]
rs13432350	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2109961	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2420442	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2901144	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4852287	0.89[EUR][1000 genomes]
rs4852288	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62149273	1.00[ASN][1000 genomes]
rs6546752	0.82[EUR][1000 genomes]
rs6546756	0.90[EUR][1000 genomes]
rs6709109	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6711265	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6722637	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6729863	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6742264	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6753073	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6758462	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs719117	1.00[ASN][1000 genomes]
rs719118	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7559131	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7583271	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9309463	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1005487	chr2:72464784-72819704	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72499600-72510400	Weak transcription	Right Ventricle	heart
2	chr2:72504800-72513200	Weak transcription	Left Ventricle	heart
3	chr2:72508200-72510600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr2:72508200-72512600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr2:72509800-72510600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr2:72509800-72510800	Enhancers	A549	lung
7	chr2:72510200-72510400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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