Variant report

Variant	rs6709109
Chromosome Location	chr2:72510385-72510386
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1003672	0.87[EUR][1000 genomes]
rs10168145	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10192800	0.83[ASN][1000 genomes]
rs10196589	0.83[EUR][1000 genomes]
rs10205108	0.86[EUR][1000 genomes]
rs10207299	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10221769	0.85[EUR][1000 genomes]
rs11126363	0.82[EUR][1000 genomes]
rs1159763	0.83[EUR][1000 genomes]
rs1159764	0.83[EUR][1000 genomes]
rs1159765	0.83[EUR][1000 genomes]
rs1159766	0.83[EUR][1000 genomes]
rs11690734	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11694921	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11902025	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13418637	0.83[EUR][1000 genomes]
rs13432350	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2109961	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2192014	0.83[ASN][1000 genomes]
rs2192015	0.83[ASN][1000 genomes]
rs2420442	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901144	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852287	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4852288	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546752	0.87[EUR][1000 genomes]
rs6546756	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6709114	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6711265	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6722637	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6729863	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6742264	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6753073	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6758462	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs719118	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7559131	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7583271	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9309463	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1005487	chr2:72464784-72819704	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72499600-72510400	Weak transcription	Right Ventricle	heart
2	chr2:72504800-72513200	Weak transcription	Left Ventricle	heart
3	chr2:72508200-72510600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr2:72508200-72512600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr2:72509800-72510600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr2:72509800-72510800	Enhancers	A549	lung
7	chr2:72510200-72510400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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