Variant report
Variant | rs11126362 |
---|---|
Chromosome Location | chr2:72393138-72393139 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1000523 | 0.85[ASN][1000 genomes] |
rs1003672 | 0.93[ASN][1000 genomes] |
rs10178138 | 0.85[ASN][1000 genomes] |
rs10178847 | 0.85[ASN][1000 genomes] |
rs10181899 | 0.85[ASN][1000 genomes] |
rs10190799 | 0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs10193543 | 0.85[ASN][1000 genomes] |
rs10196589 | 0.93[ASN][1000 genomes] |
rs10205108 | 0.93[ASN][1000 genomes] |
rs10209861 | 0.86[ASN][1000 genomes] |
rs10221767 | 0.85[ASN][1000 genomes] |
rs10221769 | 0.93[ASN][1000 genomes] |
rs10865390 | 0.93[ASN][1000 genomes] |
rs11126363 | 0.93[ASN][1000 genomes] |
rs1123199 | 0.85[ASN][1000 genomes] |
rs1159763 | 0.93[ASN][1000 genomes] |
rs1159764 | 0.93[ASN][1000 genomes] |
rs1159765 | 0.93[ASN][1000 genomes] |
rs1159766 | 0.93[ASN][1000 genomes] |
rs11681809 | 0.93[ASN][1000 genomes] |
rs12466026 | 0.85[ASN][1000 genomes] |
rs12466112 | 0.85[ASN][1000 genomes] |
rs13382986 | 0.85[ASN][1000 genomes] |
rs13387630 | 0.85[ASN][1000 genomes] |
rs13389524 | 0.85[ASN][1000 genomes] |
rs13391463 | 0.86[ASN][1000 genomes] |
rs13392314 | 0.85[ASN][1000 genomes] |
rs13395204 | 0.86[ASN][1000 genomes] |
rs13418637 | 0.93[ASN][1000 genomes] |
rs13423761 | 0.86[ASN][1000 genomes] |
rs13430254 | 0.85[ASN][1000 genomes] |
rs13430651 | 0.85[ASN][1000 genomes] |
rs17673916 | 0.85[ASN][1000 genomes] |
rs17724205 | 0.85[ASN][1000 genomes] |
rs17724860 | 0.85[ASN][1000 genomes] |
rs17725024 | 0.85[ASN][1000 genomes] |
rs1860852 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs194235 | 0.93[ASN][1000 genomes] |
rs194236 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs194237 | 0.93[ASN][1000 genomes] |
rs194238 | 0.93[ASN][1000 genomes] |
rs194239 | 0.82[ASN][1000 genomes] |
rs194240 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs194241 | 0.93[ASN][1000 genomes] |
rs194242 | 0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs194243 | 0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2041563 | 0.86[ASN][1000 genomes] |
rs2041564 | 0.86[ASN][1000 genomes] |
rs2080044 | 0.85[ASN][1000 genomes] |
rs2109963 | 0.86[ASN][1000 genomes] |
rs2159823 | 0.85[ASN][1000 genomes] |
rs28278 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34837782 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs41387 | 0.93[ASN][1000 genomes] |
rs41388 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs41389 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs41390 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs41391 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs41392 | 0.93[ASN][1000 genomes] |
rs41393 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs41394 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs41395 | 0.93[ASN][1000 genomes] |
rs41396 | 0.86[ASN][1000 genomes] |
rs41397 | 0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs41398 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs41399 | 0.93[ASN][1000 genomes] |
rs41400 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs41401 | 0.93[ASN][1000 genomes] |
rs41402 | 0.93[ASN][1000 genomes] |
rs41403 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs41405 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs41406 | 0.93[ASN][1000 genomes] |
rs41407 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs41408 | 0.93[ASN][1000 genomes] |
rs41409 | 0.86[ASN][1000 genomes] |
rs41410 | 0.87[ASN][1000 genomes] |
rs41411 | 0.87[ASN][1000 genomes] |
rs41412 | 0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs41413 | 0.87[ASN][1000 genomes] |
rs41414 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs41415 | 0.86[ASN][1000 genomes] |
rs41416 | 0.86[ASN][1000 genomes] |
rs41417 | 0.86[ASN][1000 genomes] |
rs41418 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs41419 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs41420 | 0.86[ASN][1000 genomes] |
rs4852285 | 0.86[ASN][1000 genomes] |
rs4852859 | 0.85[ASN][1000 genomes] |
rs4852861 | 0.86[ASN][1000 genomes] |
rs55764675 | 0.85[ASN][1000 genomes] |
rs55877105 | 0.86[ASN][1000 genomes] |
rs55970539 | 0.85[ASN][1000 genomes] |
rs56299443 | 0.85[ASN][1000 genomes] |
rs62147573 | 0.85[ASN][1000 genomes] |
rs62147579 | 0.86[ASN][1000 genomes] |
rs62147589 | 0.85[ASN][1000 genomes] |
rs62147626 | 0.85[ASN][1000 genomes] |
rs62147629 | 0.85[ASN][1000 genomes] |
rs62147636 | 0.85[ASN][1000 genomes] |
rs6546752 | 0.93[ASN][1000 genomes] |
rs6546753 | 0.86[ASN][1000 genomes] |
rs6546755 | 0.86[ASN][1000 genomes] |
rs6719255 | 0.85[ASN][1000 genomes] |
rs6748607 | 0.86[ASN][1000 genomes] |
rs6751276 | 0.86[ASN][1000 genomes] |
rs6760895 | 0.86[ASN][1000 genomes] |
rs7565922 | 0.86[ASN][1000 genomes] |
rs768042 | 0.86[ASN][1000 genomes] |
rs768043 | 0.86[ASN][1000 genomes] |
rs9309463 | 0.93[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv963919 | chr2:72372956-72830387 | Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:72392400-72394200 | Enhancers | Hela-S3 | cervix |
2 | chr2:72392600-72393600 | Enhancers | NHEK | skin |
3 | chr2:72393000-72393400 | Enhancers | Foreskin Keratinocyte Primary Cells skin03 | Skin |
4 | chr2:72393000-72393400 | Enhancers | HMEC | breast |
5 | chr2:72393000-72393600 | Flanking Active TSS | A549 | lung |