The 2.0 version of rSNPBase

Variant report

Variant rs41414
Chromosome Location chr2:72405827-72405828
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:94 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:72393400-72407600 Weak transcription HMEC breast
2 chr2:72393600-72414800 Weak transcription NHEK skin
3 chr2:72394400-72409800 Weak transcription A549 lung
4 chr2:72398400-72407400 Weak transcription ES-WA7 Cell Line embryonic stem cell
5 chr2:72400600-72406400 Weak transcription Fetal Brain Male brain
6 chr2:72400800-72414000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
7 chr2:72401000-72407000 Weak transcription HUES64 Cell Line embryonic stem cell
8 chr2:72401000-72407800 Strong transcription Fetal Stomach stomach
9 chr2:72401200-72406000 Weak transcription iPS-20b Cell Line embryonic stem cell
10 chr2:72401200-72406000 Weak transcription Muscle Satellite Cultured Cells --
11 chr2:72401200-72407600 Strong transcription Fetal Brain Female brain
12 chr2:72401200-72409600 Weak transcription Spleen Spleen
13 chr2:72401400-72409000 Weak transcription HUES6 Cell Line embryonic stem cell
14 chr2:72401600-72407200 Weak transcription iPS-18 Cell Line embryonic stem cell
15 chr2:72401600-72409400 Weak transcription ES-I3 Cell Line embryonic stem cell
16 chr2:72401600-72411600 Weak transcription H1 Cell Line embryonic stem cell
17 chr2:72401600-72414000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
18 chr2:72401600-72415200 Weak transcription H9 Cell Line embryonic stem cell
19 chr2:72401800-72407000 Strong transcription Brain Hippocampus Middle brain
20 chr2:72401800-72407600 Strong transcription Breast Myoepithelial Primary Cells Breast
21 chr2:72401800-72407600 Strong transcription Left Ventricle heart
22 chr2:72402000-72406200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
23 chr2:72402000-72406400 Strong transcription Brain Anterior Caudate brain
24 chr2:72402000-72410400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
25 chr2:72402200-72406400 Strong transcription Duodenum Smooth Muscle Duodenum
26 chr2:72402200-72406600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
27 chr2:72402200-72406600 Strong transcription Placenta Placenta
28 chr2:72402200-72406800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
29 chr2:72402200-72410400 Weak transcription Psoas Muscle Psoas
30 chr2:72402200-72412200 Weak transcription Primary T helper naive cells fromperipheralblood blood
31 chr2:72402400-72406400 Strong transcription Fetal Muscle Leg muscle
32 chr2:72402400-72406600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
33 chr2:72402400-72407200 Strong transcription Adipose Nuclei Adipose
34 chr2:72402400-72407400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
35 chr2:72402600-72406400 Strong transcription Primary T cells from cord blood blood
36 chr2:72402600-72407200 Strong transcription Aorta Aorta
37 chr2:72402600-72407400 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
38 chr2:72402600-72410400 Weak transcription Small Intestine intestine
39 chr2:72402800-72407000 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
40 chr2:72403000-72406400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
41 chr2:72403000-72408800 Weak transcription Primary T helper cells PMA-I stimulated --
42 chr2:72403000-72410200 Weak transcription Fetal Kidney kidney
43 chr2:72403200-72408000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
44 chr2:72403200-72408800 Weak transcription Colonic Mucosa Colon
45 chr2:72403400-72406400 Strong transcription Fetal Intestine Large intestine
46 chr2:72403400-72406600 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
47 chr2:72403400-72406600 Strong transcription Duodenum Mucosa Duodenum
48 chr2:72403400-72409000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
49 chr2:72403400-72414200 Weak transcription Cortex derived primary cultured neurospheres brain
50 chr2:72403600-72406800 Weak transcription Primary T cells fromperipheralblood blood

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Last update: Aug 31, 2015