Variant report

Variant	rs13409513
Chromosome Location	chr2:72522769-72522770
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 196 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:194)

rs_ID	r²[population]
rs10168145	1.00[CHB][hapmap]
rs10173381	1.00[CHB][hapmap];0.90[GIH][hapmap]
rs10181651	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10183056	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap];0.91[YRI][hapmap];1.00[ASN][1000 genomes]
rs10186080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10190674	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10192800	1.00[CHB][hapmap]
rs10203965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10204415	1.00[CHB][hapmap]
rs10206555	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.82[TSI][hapmap];1.00[ASN][1000 genomes]
rs10207299	1.00[CHB][hapmap]
rs10460572	1.00[ASN][1000 genomes]
rs10496183	0.96[YRI][hapmap]
rs10865391	1.00[ASN][1000 genomes]
rs11126366	1.00[CHB][hapmap];0.85[GIH][hapmap]
rs11126370	1.00[ASN][1000 genomes]
rs11126371	1.00[ASN][1000 genomes]
rs11126372	1.00[ASN][1000 genomes]
rs11126373	1.00[ASN][1000 genomes]
rs11685876	0.87[YRI][hapmap]
rs11690734	1.00[CHB][hapmap]
rs11694921	1.00[CHB][hapmap]
rs11890482	0.96[YRI][hapmap]
rs11891573	0.96[YRI][hapmap]
rs11894521	0.96[YRI][hapmap]
rs11902025	1.00[CHB][hapmap]
rs11903912	0.80[YRI][hapmap]
rs12466613	1.00[CHB][hapmap]
rs12467816	1.00[CHB][hapmap]
rs12468057	1.00[CHB][hapmap]
rs12471875	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12476397	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];1.00[ASN][1000 genomes]
rs12618390	1.00[ASN][1000 genomes]
rs12713772	1.00[ASN][1000 genomes]
rs12713773	1.00[ASN][1000 genomes]
rs12998681	1.00[ASN][1000 genomes]
rs13016873	1.00[ASN][1000 genomes]
rs13383535	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13390754	1.00[CHB][hapmap];0.90[GIH][hapmap]
rs13409641	1.00[CHB][hapmap]
rs13424607	1.00[ASN][1000 genomes]
rs13432350	1.00[CHB][hapmap]
rs1400580	1.00[ASN][1000 genomes]
rs1400582	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1517179	0.84[YRI][hapmap]
rs1568145	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17040320	0.96[YRI][hapmap]
rs1711838	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2109960	1.00[CHB][hapmap]
rs2138683	1.00[ASN][1000 genomes]
rs2192014	1.00[CHB][hapmap]
rs2192015	1.00[CHB][hapmap]
rs2203679	1.00[CHB][hapmap]
rs2420444	1.00[CHB][hapmap]
rs2901146	1.00[CHB][hapmap]
rs2901190	0.80[YRI][hapmap]
rs3106879	1.00[ASN][1000 genomes]
rs3106880	1.00[ASN][1000 genomes]
rs3115351	1.00[CHB][hapmap];0.84[GIH][hapmap]
rs34127669	1.00[ASN][1000 genomes]
rs34183790	0.86[EUR][1000 genomes]
rs4144318	1.00[ASN][1000 genomes]
rs4852286	1.00[CHB][hapmap]
rs4852287	1.00[CHB][hapmap]
rs4852288	1.00[CHB][hapmap]
rs4852291	1.00[ASN][1000 genomes]
rs4852872	1.00[ASN][1000 genomes]
rs4852875	1.00[ASN][1000 genomes]
rs4852876	1.00[ASN][1000 genomes]
rs4852877	1.00[ASN][1000 genomes]
rs581976	1.00[ASN][1000 genomes]
rs583673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs585653	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];1.00[ASN][1000 genomes]
rs585938	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.94[TSI][hapmap];1.00[ASN][1000 genomes]
rs587431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs587744	1.00[CHB][hapmap]
rs589547	1.00[CHB][hapmap]
rs590252	1.00[CHB][hapmap]
rs590345	1.00[CHB][hapmap]
rs59095814	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs597799	1.00[ASN][1000 genomes]
rs598138	1.00[CHB][hapmap]
rs598496	1.00[CHB][hapmap]
rs598547	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs602465	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs603324	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs613880	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs614653	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs619343	1.00[ASN][1000 genomes]
rs62149275	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62149282	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs623095	1.00[ASN][1000 genomes]
rs625434	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs628432	1.00[CHB][hapmap]
rs630241	1.00[CHB][hapmap]
rs631550	1.00[ASN][1000 genomes]
rs632670	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.94[TSI][hapmap];0.81[YRI][hapmap];1.00[ASN][1000 genomes]
rs634476	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];1.00[ASN][1000 genomes]
rs634574	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs634785	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs634929	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];1.00[ASN][1000 genomes]
rs636319	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636332	1.00[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636734	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs638854	1.00[CHB][hapmap]
rs640610	1.00[CHB][hapmap]
rs641123	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs641939	1.00[CHB][hapmap]
rs642652	1.00[CHB][hapmap];0.84[GIH][hapmap]
rs642847	1.00[ASN][1000 genomes]
rs645489	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.94[TSI][hapmap];1.00[ASN][1000 genomes]
rs646357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs647242	1.00[CHB][hapmap]
rs647269	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs650352	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs653220	1.00[CHB][hapmap]
rs653842	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs654157	1.00[ASN][1000 genomes]
rs6546756	1.00[CHB][hapmap]
rs6546757	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546758	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546760	1.00[CHB][hapmap]
rs6546761	0.94[YRI][hapmap]
rs6546763	0.80[YRI][hapmap]
rs6546764	1.00[CHB][hapmap]
rs6546765	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs656370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs656440	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs658067	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];1.00[ASN][1000 genomes]
rs659833	1.00[CHB][hapmap]
rs661395	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs663218	1.00[CHB][hapmap];0.84[GIH][hapmap]
rs664652	1.00[ASN][1000 genomes]
rs666233	1.00[CHB][hapmap];0.90[GIH][hapmap]
rs666361	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs669074	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6707920	0.96[YRI][hapmap]
rs6711257	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6711442	0.84[YRI][hapmap]
rs6714580	1.00[ASN][1000 genomes]
rs6714595	1.00[CHB][hapmap]
rs671550	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs671721	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.94[TSI][hapmap];1.00[ASN][1000 genomes]
rs6717250	0.88[YRI][hapmap]
rs6723380	0.88[YRI][hapmap]
rs6729863	1.00[CHB][hapmap]
rs6733210	1.00[CHB][hapmap]
rs6733532	0.96[YRI][hapmap]
rs6735400	0.96[YRI][hapmap]
rs6736305	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[ASN][1000 genomes]
rs6741956	1.00[ASN][1000 genomes]
rs6742088	1.00[ASN][1000 genomes]
rs6742264	1.00[CHB][hapmap]
rs6742312	1.00[ASN][1000 genomes]
rs6746586	0.95[YRI][hapmap]
rs674863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6750766	1.00[ASN][1000 genomes]
rs6752122	1.00[CHB][hapmap]
rs6753073	1.00[CHB][hapmap]
rs6755440	0.84[YRI][hapmap]
rs6758462	1.00[CHB][hapmap]
rs6758593	1.00[CHB][hapmap]
rs6758689	0.96[YRI][hapmap]
rs678684	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];1.00[ASN][1000 genomes]
rs680380	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];1.00[ASN][1000 genomes]
rs680495	1.00[CHB][hapmap]
rs681574	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];1.00[ASN][1000 genomes]
rs681908	1.00[ASN][1000 genomes]
rs683328	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs684673	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];1.00[ASN][1000 genomes]
rs687325	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs687371	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs688433	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap];0.81[YRI][hapmap];1.00[ASN][1000 genomes]
rs689154	1.00[CHB][hapmap]
rs7557942	0.96[YRI][hapmap]
rs7558686	1.00[CHB][hapmap];0.90[GIH][hapmap]
rs7558919	1.00[CHB][hapmap]
rs7559116	0.83[YRI][hapmap]
rs7559131	1.00[CHB][hapmap]
rs7568803	1.00[CHB][hapmap]
rs7571517	0.96[YRI][hapmap]
rs7577244	0.96[YRI][hapmap]
rs7577877	1.00[CHB][hapmap]
rs7583271	1.00[CHB][hapmap]
rs7584538	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7594350	1.00[CHB][hapmap]
rs7595180	1.00[CHB][hapmap]
rs7596126	0.83[YRI][hapmap]
rs7603966	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7604296	0.96[YRI][hapmap]
rs7607353	0.84[YRI][hapmap]
rs7608054	0.96[YRI][hapmap]
rs9309464	1.00[CHB][hapmap];0.90[GIH][hapmap]
rs983928	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1005487	chr2:72464784-72819704	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13409513	CYP26B1	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72522400-72523000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr2:72522400-72523800	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr2:72522600-72522800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:72522600-72522800	Enhancers	A549	lung
5	chr2:72522600-72523000	Active TSS	Primary hematopoietic stem cells	blood

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