Variant report

Variant	rs2109960
Chromosome Location	chr2:72513414-72513415
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 150 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:148)

rs_ID	r²[population]
rs1000523	0.87[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10168145	1.00[CHB][hapmap]
rs10173381	1.00[CHB][hapmap]
rs10175915	0.86[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10178138	0.87[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10178847	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10181899	0.87[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10183056	1.00[CHB][hapmap]
rs10186080	1.00[CHB][hapmap]
rs10190674	1.00[CHB][hapmap]
rs10192800	1.00[CHB][hapmap]
rs10193543	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10203965	1.00[CHB][hapmap]
rs10204415	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10206555	1.00[CHB][hapmap]
rs10207299	1.00[CHB][hapmap]
rs10221767	0.87[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11126366	1.00[CHB][hapmap]
rs1123199	0.87[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11690734	1.00[CHB][hapmap]
rs11694921	1.00[CHB][hapmap]
rs11902025	1.00[CHB][hapmap]
rs12463825	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12466026	0.87[CEU][hapmap];0.89[EUR][1000 genomes]
rs12466112	0.87[CEU][hapmap];0.89[EUR][1000 genomes]
rs12466613	1.00[CHB][hapmap]
rs12467816	1.00[CHB][hapmap]
rs12468057	1.00[CHB][hapmap]
rs12471875	1.00[CHB][hapmap]
rs12476397	1.00[CHB][hapmap]
rs13382986	0.92[EUR][1000 genomes]
rs13383535	1.00[CHB][hapmap]
rs13387630	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13389524	0.87[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13390754	1.00[CHB][hapmap]
rs13392314	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13409513	1.00[CHB][hapmap]
rs13409641	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13430254	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs13430651	0.90[EUR][1000 genomes]
rs13432350	1.00[CHB][hapmap]
rs1400582	1.00[CHB][hapmap]
rs1568145	1.00[CHB][hapmap]
rs17673916	0.86[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17724205	0.87[CEU][hapmap];0.89[EUR][1000 genomes]
rs17724860	0.86[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17725024	0.86[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2080044	0.87[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2159823	0.87[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2192014	1.00[CHB][hapmap]
rs2192015	1.00[CHB][hapmap]
rs2203679	1.00[CHB][hapmap]
rs2420444	1.00[CHB][hapmap]
rs2901146	1.00[CHB][hapmap]
rs3115351	1.00[CHB][hapmap]
rs4852286	1.00[CHB][hapmap]
rs4852287	1.00[CHB][hapmap]
rs4852288	1.00[CHB][hapmap]
rs4852859	0.90[EUR][1000 genomes]
rs55764675	0.92[EUR][1000 genomes]
rs55970539	0.92[EUR][1000 genomes]
rs56045434	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56143801	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56299443	0.92[EUR][1000 genomes]
rs585653	1.00[CHB][hapmap]
rs587431	1.00[CHB][hapmap]
rs587744	1.00[CHB][hapmap]
rs589547	1.00[CHB][hapmap]
rs590252	1.00[CHB][hapmap]
rs590345	1.00[CHB][hapmap]
rs598138	1.00[CHB][hapmap]
rs598496	1.00[CHB][hapmap]
rs602465	1.00[CHB][hapmap]
rs613880	1.00[CHB][hapmap]
rs614653	1.00[CHB][hapmap]
rs62147573	0.89[EUR][1000 genomes]
rs62147589	0.90[EUR][1000 genomes]
rs62147626	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62147629	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62147636	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62149273	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs625434	1.00[CHB][hapmap]
rs628432	1.00[CHB][hapmap]
rs630241	1.00[CHB][hapmap]
rs632670	1.00[CHB][hapmap]
rs634476	1.00[CHB][hapmap]
rs634574	1.00[CHB][hapmap]
rs634785	1.00[CHB][hapmap]
rs634929	1.00[CHB][hapmap]
rs636319	1.00[CHB][hapmap]
rs636734	1.00[CHB][hapmap]
rs638854	1.00[CHB][hapmap]
rs640610	1.00[CHB][hapmap]
rs641123	1.00[CHB][hapmap]
rs641939	1.00[CHB][hapmap]
rs642652	1.00[CHB][hapmap]
rs645489	1.00[CHB][hapmap]
rs646357	1.00[CHB][hapmap]
rs647242	1.00[CHB][hapmap]
rs647269	1.00[CHB][hapmap]
rs650352	1.00[CHB][hapmap]
rs653220	1.00[CHB][hapmap]
rs6546756	1.00[CHB][hapmap]
rs6546760	1.00[CHB][hapmap]
rs6546764	1.00[CHB][hapmap]
rs6546765	1.00[CHB][hapmap]
rs656370	1.00[CHB][hapmap]
rs656440	1.00[CHB][hapmap]
rs658067	1.00[CHB][hapmap]
rs659833	1.00[CHB][hapmap]
rs663218	1.00[CHB][hapmap]
rs666233	1.00[CHB][hapmap]
rs666361	1.00[CHB][hapmap]
rs669074	1.00[CHB][hapmap]
rs6709114	1.00[ASN][1000 genomes]
rs6711257	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6714595	1.00[CHB][hapmap]
rs671721	1.00[CHB][hapmap]
rs6719255	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6729863	1.00[CHB][hapmap]
rs6733210	1.00[CHB][hapmap]
rs6742264	1.00[CHB][hapmap]
rs674863	1.00[CHB][hapmap]
rs6752122	1.00[CHB][hapmap]
rs6753073	1.00[CHB][hapmap]
rs6758462	1.00[CHB][hapmap]
rs6758593	1.00[CHB][hapmap]
rs678684	1.00[CHB][hapmap]
rs680380	1.00[CHB][hapmap]
rs680495	1.00[CHB][hapmap]
rs681574	1.00[CHB][hapmap]
rs683328	1.00[CHB][hapmap]
rs684673	1.00[CHB][hapmap]
rs687325	1.00[CHB][hapmap]
rs687371	1.00[CHB][hapmap]
rs688433	1.00[CHB][hapmap]
rs689154	1.00[CHB][hapmap]
rs719117	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7558686	1.00[CHB][hapmap]
rs7558919	1.00[CHB][hapmap]
rs7559131	1.00[CHB][hapmap]
rs7568803	1.00[CHB][hapmap]
rs7577877	1.00[CHB][hapmap]
rs7583271	1.00[CHB][hapmap]
rs7594350	1.00[CHB][hapmap]
rs7595180	1.00[CHB][hapmap]
rs7603966	1.00[CHB][hapmap]
rs9309464	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1005487	chr2:72464784-72819704	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2109960	CYP26B1	cis	Whole Blood	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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