Variant report

Variant	rs10203965
Chromosome Location	chr2:72576344-72576345
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:72576055..72577738-chr2:72579767..72581620,2	K562	blood:

Variant related genes	Relation type
ENSG00000144036	Chromatin interaction

Extended variants
information (count: 208 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:204)

rs_ID	r²[population]
rs10168145	1.00[CHB][hapmap]
rs10173381	1.00[CHB][hapmap];0.89[GIH][hapmap]
rs10181651	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10183056	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.94[TSI][hapmap];1.00[ASN][1000 genomes]
rs10186080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10190674	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10192800	1.00[CHB][hapmap]
rs10204415	1.00[CHB][hapmap]
rs10206555	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.82[TSI][hapmap];1.00[ASN][1000 genomes]
rs10207299	1.00[CHB][hapmap]
rs10460572	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.94[TSI][hapmap];1.00[ASN][1000 genomes]
rs10865391	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10865392	1.00[ASN][1000 genomes]
rs11126366	1.00[CHB][hapmap];0.84[GIH][hapmap]
rs11126370	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.94[TSI][hapmap];1.00[ASN][1000 genomes]
rs11126371	1.00[ASN][1000 genomes]
rs11126372	1.00[ASN][1000 genomes]
rs11126373	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11126374	1.00[ASN][1000 genomes]
rs11690734	1.00[CHB][hapmap]
rs11694921	1.00[CHB][hapmap]
rs11902025	1.00[CHB][hapmap]
rs12052508	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12466613	1.00[CHB][hapmap]
rs12467816	1.00[CHB][hapmap]
rs12468057	1.00[CHB][hapmap]
rs12471136	1.00[ASN][1000 genomes]
rs12471875	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12476130	1.00[ASN][1000 genomes]
rs12476397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12618390	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12713772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12713773	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12992973	1.00[CHB][hapmap]
rs12998681	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.94[TSI][hapmap];1.00[ASN][1000 genomes]
rs13008041	1.00[ASN][1000 genomes]
rs13008258	1.00[ASN][1000 genomes]
rs13016873	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs13383535	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13390754	1.00[CHB][hapmap];0.89[GIH][hapmap]
rs13409513	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13409641	1.00[CHB][hapmap]
rs13424607	1.00[ASN][1000 genomes]
rs13432350	1.00[CHB][hapmap]
rs1400580	1.00[ASN][1000 genomes]
rs1400581	1.00[CHB][hapmap]
rs1400582	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446888	1.00[ASN][1000 genomes]
rs1446889	1.00[ASN][1000 genomes]
rs1446890	1.00[ASN][1000 genomes]
rs1446891	1.00[ASN][1000 genomes]
rs1446892	1.00[ASN][1000 genomes]
rs1446893	1.00[ASN][1000 genomes]
rs1517181	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1517185	1.00[CHB][hapmap]
rs1568145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1711838	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1992799	1.00[ASN][1000 genomes]
rs2109960	1.00[CHB][hapmap]
rs2138683	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.94[TSI][hapmap];1.00[ASN][1000 genomes]
rs2192014	1.00[CHB][hapmap]
rs2192015	1.00[CHB][hapmap]
rs2203679	1.00[CHB][hapmap]
rs2420444	1.00[CHB][hapmap]
rs2901146	1.00[CHB][hapmap]
rs3106879	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3106880	1.00[ASN][1000 genomes]
rs3115351	1.00[CHB][hapmap];0.83[GIH][hapmap]
rs34127669	1.00[ASN][1000 genomes]
rs34183790	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4144318	1.00[ASN][1000 genomes]
rs4407272	1.00[ASN][1000 genomes]
rs4852286	1.00[CHB][hapmap]
rs4852287	1.00[CHB][hapmap]
rs4852288	1.00[CHB][hapmap]
rs4852291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4852293	1.00[ASN][1000 genomes]
rs4852872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4852873	1.00[CHB][hapmap]
rs4852874	1.00[CHB][hapmap]
rs4852875	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.94[TSI][hapmap];1.00[ASN][1000 genomes]
rs4852876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4852877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4852878	1.00[ASN][1000 genomes]
rs4852880	1.00[ASN][1000 genomes]
rs581976	1.00[ASN][1000 genomes]
rs583673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs585653	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs585938	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];1.00[ASN][1000 genomes]
rs587431	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs587744	1.00[CHB][hapmap]
rs589547	1.00[CHB][hapmap]
rs590252	1.00[CHB][hapmap]
rs590345	1.00[CHB][hapmap]
rs59095814	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs597799	1.00[ASN][1000 genomes]
rs598138	1.00[CHB][hapmap]
rs598496	1.00[CHB][hapmap]
rs598547	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs602465	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs603324	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs613880	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs614653	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs619343	1.00[ASN][1000 genomes]
rs62149275	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62149282	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs623095	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs625434	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs626469	0.86[ASW][hapmap];0.92[YRI][hapmap]
rs628432	1.00[CHB][hapmap]
rs630241	1.00[CHB][hapmap]
rs631550	1.00[ASN][1000 genomes]
rs632670	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.94[TSI][hapmap];1.00[ASN][1000 genomes]
rs634476	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs634574	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs634785	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs634929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs636319	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636332	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636734	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs638854	1.00[CHB][hapmap]
rs640610	1.00[CHB][hapmap]
rs641123	0.86[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.94[TSI][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs641939	1.00[CHB][hapmap]
rs642652	1.00[CHB][hapmap];0.83[GIH][hapmap]
rs642847	1.00[ASN][1000 genomes]
rs645489	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];1.00[ASN][1000 genomes]
rs646357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs647242	1.00[CHB][hapmap]
rs647269	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs650352	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs653220	1.00[CHB][hapmap]
rs653842	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs654157	1.00[ASN][1000 genomes]
rs6546756	1.00[CHB][hapmap]
rs6546757	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546758	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546760	1.00[CHB][hapmap]
rs6546764	1.00[CHB][hapmap]
rs6546765	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546776	1.00[ASN][1000 genomes]
rs6546777	1.00[ASN][1000 genomes]
rs6546778	1.00[ASN][1000 genomes]
rs656370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs656440	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs658067	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs659833	1.00[CHB][hapmap]
rs661395	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs663218	1.00[CHB][hapmap];0.83[GIH][hapmap]
rs664652	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs666233	1.00[CHB][hapmap];0.89[GIH][hapmap]
rs666361	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs669074	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6711257	1.00[ASN][1000 genomes]
rs6714580	1.00[ASN][1000 genomes]
rs6714595	1.00[CHB][hapmap]
rs671550	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs671721	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.90[LWK][hapmap];0.86[MEX][hapmap];0.93[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6729863	1.00[CHB][hapmap]
rs6733210	1.00[CHB][hapmap]
rs6736305	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs6741956	1.00[ASN][1000 genomes]
rs6742088	1.00[ASN][1000 genomes]
rs6742264	1.00[CHB][hapmap]
rs6742312	1.00[ASN][1000 genomes]
rs6747378	1.00[ASN][1000 genomes]
rs674863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6750766	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.94[TSI][hapmap];1.00[ASN][1000 genomes]
rs6752122	1.00[CHB][hapmap]
rs6753073	1.00[CHB][hapmap]
rs6758462	1.00[CHB][hapmap]
rs6758593	1.00[CHB][hapmap]
rs678684	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs680380	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs680495	1.00[CHB][hapmap]
rs681574	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs681908	1.00[ASN][1000 genomes]
rs683328	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs684673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs687325	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs687371	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs688433	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.94[TSI][hapmap];1.00[ASN][1000 genomes]
rs689154	1.00[CHB][hapmap]
rs7420667	1.00[CHB][hapmap]
rs7558686	1.00[CHB][hapmap];0.89[GIH][hapmap]
rs7558919	1.00[CHB][hapmap]
rs7559131	1.00[CHB][hapmap]
rs7560529	1.00[ASN][1000 genomes]
rs7560599	1.00[ASN][1000 genomes]
rs7565198	1.00[ASN][1000 genomes]
rs7568803	1.00[CHB][hapmap]
rs7577877	1.00[CHB][hapmap]
rs7583271	1.00[CHB][hapmap]
rs7584538	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7591025	1.00[ASN][1000 genomes]
rs7591303	1.00[ASN][1000 genomes]
rs7594350	1.00[CHB][hapmap]
rs7595180	1.00[CHB][hapmap]
rs7598238	1.00[ASN][1000 genomes]
rs7601020	1.00[ASN][1000 genomes]
rs7601318	1.00[ASN][1000 genomes]
rs7603966	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9309464	1.00[CHB][hapmap];0.89[GIH][hapmap]
rs983928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1005487	chr2:72464784-72819704	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv999179	chr2:72561463-72761103	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1008335	chr2:72561463-72819704	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10203965	CYP26B1	cis	parietal	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72531200-72594800	Weak transcription	Esophagus	oesophagus
2	chr2:72553800-72594600	Weak transcription	Aorta	Aorta
3	chr2:72559200-72607400	Weak transcription	Liver	Liver
4	chr2:72560600-72594800	Weak transcription	Pancreas	Pancrea
5	chr2:72569000-72577600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:72569000-72577800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:72569600-72577600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:72572200-72601400	Weak transcription	Adipose Nuclei	Adipose
9	chr2:72572200-72607200	Weak transcription	Psoas Muscle	Psoas
10	chr2:72573600-72578000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr2:72573600-72595000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr2:72574200-72594800	Weak transcription	Placenta	Placenta
13	chr2:72575200-72588800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr2:72576000-72576600	Enhancers	Fetal Heart	heart
15	chr2:72576000-72576800	Enhancers	HUVEC	blood vessel
16	chr2:72576200-72576400	Enhancers	HUES48 Cell Line	embryonic stem cell

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