Variant report
| Variant | rs12467816 |
|---|---|
| Chromosome Location | chr2:72523018-72523019 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:115)
| rs_ID | r2[population] |
|---|---|
| rs10168145 | 1.00[CHB][hapmap] |
| rs10173381 | 1.00[CHB][hapmap] |
| rs10183056 | 1.00[CHB][hapmap] |
| rs10186080 | 1.00[CHB][hapmap] |
| rs10190674 | 1.00[CHB][hapmap] |
| rs10192800 | 1.00[CHB][hapmap] |
| rs10203965 | 1.00[CHB][hapmap] |
| rs10204415 | 1.00[CHB][hapmap] |
| rs10206555 | 1.00[CHB][hapmap] |
| rs10207299 | 1.00[CHB][hapmap] |
| rs11126366 | 1.00[CHB][hapmap] |
| rs11690734 | 1.00[CHB][hapmap] |
| rs11694921 | 1.00[CHB][hapmap] |
| rs11902025 | 1.00[CHB][hapmap] |
| rs12466613 | 1.00[CHB][hapmap] |
| rs12468057 | 1.00[CHB][hapmap] |
| rs12471875 | 1.00[CHB][hapmap] |
| rs12476397 | 1.00[CHB][hapmap] |
| rs13383535 | 1.00[CHB][hapmap] |
| rs13390754 | 1.00[CHB][hapmap] |
| rs13409513 | 1.00[CHB][hapmap] |
| rs13409641 | 1.00[CHB][hapmap] |
| rs13432350 | 1.00[CHB][hapmap] |
| rs1400582 | 1.00[CHB][hapmap];1.00[AFR][1000 genomes] |
| rs1568145 | 1.00[CHB][hapmap] |
| rs1711838 | 1.00[CHB][hapmap] |
| rs2109960 | 1.00[CHB][hapmap] |
| rs2192014 | 1.00[CHB][hapmap] |
| rs2192015 | 1.00[CHB][hapmap] |
| rs2203679 | 1.00[CHB][hapmap] |
| rs2420444 | 1.00[CHB][hapmap] |
| rs2901146 | 1.00[CHB][hapmap] |
| rs3115351 | 1.00[CHB][hapmap] |
| rs4852286 | 1.00[CHB][hapmap] |
| rs4852287 | 1.00[CHB][hapmap] |
| rs4852288 | 1.00[CHB][hapmap] |
| rs583673 | 1.00[CHB][hapmap] |
| rs585653 | 1.00[CHB][hapmap] |
| rs585938 | 1.00[CHB][hapmap] |
| rs587431 | 1.00[CHB][hapmap] |
| rs587744 | 1.00[CHB][hapmap] |
| rs589547 | 1.00[CHB][hapmap] |
| rs590252 | 1.00[CHB][hapmap] |
| rs590345 | 1.00[CHB][hapmap] |
| rs598138 | 1.00[CHB][hapmap] |
| rs598496 | 1.00[CHB][hapmap] |
| rs602465 | 1.00[CHB][hapmap] |
| rs613880 | 1.00[CHB][hapmap] |
| rs614653 | 1.00[CHB][hapmap] |
| rs625434 | 1.00[CHB][hapmap] |
| rs628432 | 1.00[CHB][hapmap] |
| rs630241 | 1.00[CHB][hapmap] |
| rs632670 | 1.00[CHB][hapmap] |
| rs634476 | 1.00[CHB][hapmap] |
| rs634574 | 1.00[CHB][hapmap] |
| rs634785 | 1.00[CHB][hapmap] |
| rs634929 | 1.00[CHB][hapmap] |
| rs636319 | 1.00[CHB][hapmap] |
| rs636734 | 1.00[CHB][hapmap] |
| rs638854 | 1.00[CHB][hapmap] |
| rs640610 | 1.00[CHB][hapmap] |
| rs641123 | 1.00[CHB][hapmap] |
| rs641939 | 1.00[CHB][hapmap] |
| rs642652 | 1.00[CHB][hapmap] |
| rs645489 | 1.00[CHB][hapmap] |
| rs646357 | 1.00[CHB][hapmap] |
| rs647242 | 1.00[CHB][hapmap] |
| rs647269 | 1.00[CHB][hapmap] |
| rs650352 | 1.00[CHB][hapmap] |
| rs653220 | 1.00[CHB][hapmap] |
| rs6546756 | 1.00[CHB][hapmap] |
| rs6546760 | 1.00[CHB][hapmap] |
| rs6546764 | 1.00[CHB][hapmap] |
| rs6546765 | 1.00[CHB][hapmap] |
| rs656370 | 1.00[CHB][hapmap] |
| rs656440 | 1.00[CHB][hapmap] |
| rs658067 | 1.00[CHB][hapmap] |
| rs659833 | 1.00[CHB][hapmap] |
| rs663218 | 1.00[CHB][hapmap] |
| rs666233 | 1.00[CHB][hapmap] |
| rs666361 | 1.00[CHB][hapmap] |
| rs669074 | 1.00[CHB][hapmap] |
| rs6714595 | 1.00[CHB][hapmap] |
| rs671721 | 1.00[CHB][hapmap] |
| rs6729863 | 1.00[CHB][hapmap] |
| rs6733210 | 1.00[CHB][hapmap] |
| rs6742264 | 1.00[CHB][hapmap] |
| rs674863 | 1.00[CHB][hapmap] |
| rs6752122 | 1.00[CHB][hapmap] |
| rs6753073 | 1.00[CHB][hapmap] |
| rs6758462 | 1.00[CHB][hapmap] |
| rs6758593 | 1.00[CHB][hapmap] |
| rs678684 | 1.00[CHB][hapmap] |
| rs680380 | 1.00[CHB][hapmap] |
| rs680495 | 1.00[CHB][hapmap] |
| rs681574 | 1.00[CHB][hapmap] |
| rs681908 | 1.00[AFR][1000 genomes] |
| rs683328 | 1.00[CHB][hapmap] |
| rs684673 | 1.00[CHB][hapmap] |
| rs687325 | 1.00[CHB][hapmap] |
| rs687371 | 1.00[CHB][hapmap] |
| rs688433 | 1.00[CHB][hapmap] |
| rs689154 | 1.00[CHB][hapmap] |
| rs72835275 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72835277 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7558686 | 1.00[CHB][hapmap] |
| rs7558919 | 1.00[CHB][hapmap] |
| rs7559131 | 1.00[CHB][hapmap] |
| rs7568803 | 1.00[CHB][hapmap] |
| rs7577877 | 1.00[CHB][hapmap] |
| rs7583271 | 1.00[CHB][hapmap] |
| rs7594350 | 1.00[CHB][hapmap] |
| rs7595180 | 1.00[CHB][hapmap] |
| rs7603966 | 1.00[CHB][hapmap] |
| rs9309464 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv963919 | chr2:72372956-72830387 | Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1005487 | chr2:72464784-72819704 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:72522400-72523800 | Enhancers | Primary hematopoietic stem cells short term culture | blood |
| 2 | chr2:72522800-72523200 | Active TSS | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 3 | chr2:72523000-72523600 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
