Variant report

Variant	rs35195619
Chromosome Location	chr7:83788438-83788439
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12154926	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12154929	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13226948	0.83[EUR][1000 genomes]
rs13228833	0.81[ASN][1000 genomes]
rs13236303	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17242340	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34897715	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35360498	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4732541	0.82[EUR][1000 genomes]
rs6946868	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6957333	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6970168	0.83[EUR][1000 genomes]
rs7790681	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv888629	chr7:83722691-83896025	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1017884	chr7:83724138-83972995	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538995	chr7:83724138-83972995	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv517852	chr7:83782435-83794756	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv888630	chr7:83782839-83809111	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83770800-83795000	Weak transcription	NHDF-Ad	bronchial
2	chr7:83775400-83791600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:83777000-83803000	Weak transcription	NHLF	lung
4	chr7:83778000-83803000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:83779400-83791600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:83783000-83788800	Weak transcription	Fetal Heart	heart
7	chr7:83785000-83789000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr7:83785000-83791600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr7:83785000-83803000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:83785200-83790600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:83785200-83790800	Weak transcription	Fetal Stomach	stomach
12	chr7:83787000-83791400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr7:83787000-83791400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr7:83787000-83791600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr7:83787200-83790800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:83787200-83791200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr7:83787200-83791600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr7:83787200-83791600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr7:83787200-83791600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr7:83787400-83792000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr7:83787400-83792000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr7:83787400-83803000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr7:83787800-83789400	Enhancers	Rectal Smooth Muscle	rectum
24	chr7:83787800-83790000	Enhancers	Colon Smooth Muscle	Colon
25	chr7:83787800-83804600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr7:83788200-83788800	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links