Variant report

Variant	rs6957333
Chromosome Location	chr7:83761291-83761292
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:83754771..83757226-chr7:83760360..83762151,2	MCF-7	breast:

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10488267	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10488268	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1156053	0.82[AMR][1000 genomes]
rs11971623	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11972281	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11976014	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11976072	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11976558	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11977682	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12154926	0.82[EUR][1000 genomes]
rs12154929	0.82[EUR][1000 genomes]
rs12707611	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12707612	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12707614	0.82[AMR][1000 genomes]
rs12707618	0.82[AMR][1000 genomes]
rs12707620	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13224288	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13226948	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13228082	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13228833	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13233962	0.83[AMR][1000 genomes]
rs13236303	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13236641	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13241906	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17232537	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17232705	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17241389	0.84[AMR][1000 genomes]
rs17242340	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17298417	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17300760	0.87[AMR][1000 genomes]
rs1859491	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1990043	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1990045	0.81[AMR][1000 genomes]
rs2040871	0.82[AMR][1000 genomes]
rs2040877	0.80[AMR][1000 genomes]
rs2057844	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2057845	0.85[EUR][1000 genomes]
rs2057846	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2301891	0.82[AMR][1000 genomes]
rs2372030	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2888221	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3029	0.87[AMR][1000 genomes]
rs34132658	0.80[AMR][1000 genomes]
rs34197283	0.80[AMR][1000 genomes]
rs34614886	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34665905	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34897715	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34934460	0.80[AMR][1000 genomes]
rs35195619	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35360498	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35638242	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35824530	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36064207	0.80[AMR][1000 genomes]
rs3757624	0.87[AMR][1000 genomes]
rs3801615	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3801616	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3801617	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3801622	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3801629	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3801630	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3801632	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3801633	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3801634	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3801636	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3801637	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3801643	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3801649	0.82[AMR][1000 genomes]
rs3801650	0.83[AMR][1000 genomes]
rs4732540	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4732541	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4732544	0.81[AMR][1000 genomes]
rs55679601	0.84[AMR][1000 genomes]
rs55740798	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62477290	0.80[AMR][1000 genomes]
rs62477294	0.80[AMR][1000 genomes]
rs62477298	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62477300	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67782928	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6946868	0.83[EUR][1000 genomes]
rs6960973	0.80[EUR][1000 genomes]
rs6965990	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6970168	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs727650	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs727651	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs764116	0.82[AMR][1000 genomes]
rs764117	0.82[AMR][1000 genomes]
rs7780843	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7784963	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7785176	0.85[EUR][1000 genomes]
rs7787984	0.80[AMR][1000 genomes]
rs7789342	0.87[AMR][1000 genomes]
rs7790681	0.83[ASN][1000 genomes]
rs7804363	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7806871	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7808725	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7808859	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs917089	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs917090	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs917091	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs995866	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv888629	chr7:83722691-83896025	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1017884	chr7:83724138-83972995	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538995	chr7:83724138-83972995	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83734400-83762800	Weak transcription	Fetal Muscle Leg	muscle
2	chr7:83745000-83769400	Weak transcription	Fetal Stomach	stomach
3	chr7:83752600-83769600	Weak transcription	A549	lung
4	chr7:83753800-83763400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr7:83753800-83763400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr7:83753800-83763400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:83753800-83766800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:83753800-83766800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr7:83753800-83768000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:83753800-83768200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr7:83753800-83769600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr7:83753800-83770800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr7:83754000-83763400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr7:83754000-83767400	Weak transcription	NHLF	lung
15	chr7:83754000-83767800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:83754000-83772200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr7:83754000-83774200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr7:83754800-83763400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:83755000-83763400	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr7:83755000-83768800	Weak transcription	Colon Smooth Muscle	Colon
21	chr7:83756800-83763000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr7:83756800-83764000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr7:83757200-83762400	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr7:83758600-83765400	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr7:83759600-83762200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr7:83760000-83763400	Weak transcription	NHDF-Ad	bronchial
27	chr7:83761000-83768600	Weak transcription	Fetal Lung	lung
28	chr7:83761000-83775200	Weak transcription	Rectal Smooth Muscle	rectum
29	chr7:83761200-83761400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived

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