Variant report

Variant	rs35202059
Chromosome Location	chr13:38027236-38027237
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10514842	1.00[AMR][1000 genomes]
rs55872952	1.00[AMR][1000 genomes]
rs55893054	1.00[AMR][1000 genomes]
rs56158304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56729742	1.00[AMR][1000 genomes]
rs59890584	1.00[AMR][1000 genomes]
rs61256792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs729543	1.00[AMR][1000 genomes]
rs73450690	1.00[AMR][1000 genomes]
rs74045756	1.00[AMR][1000 genomes]
rs74045761	1.00[AMR][1000 genomes]
rs74045762	1.00[AMR][1000 genomes]
rs74045954	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74046203	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74046204	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74046207	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74046209	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs959089	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv899994	chr13:37816086-38087145	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1038850	chr13:37820489-38209571	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv34109	chr13:37843819-38276391	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv832582	chr13:37943056-38124252	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1045716	chr13:37952062-38394595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38022800-38027400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr13:38025400-38027600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:38025400-38028000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr13:38026200-38028000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr13:38026800-38031600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr13:38027000-38028000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr13:38027000-38034200	Weak transcription	Colon Smooth Muscle	Colon
8	chr13:38027200-38027800	Enhancers	NHDF-Ad	bronchial
9	chr13:38027200-38028000	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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