Variant report

Variant	rs74045756
Chromosome Location	chr13:38003993-38003994
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10514842	1.00[AMR][1000 genomes]
rs35202059	1.00[AMR][1000 genomes]
rs55872952	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55893054	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56158304	1.00[AMR][1000 genomes]
rs56729742	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59890584	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61256792	1.00[AMR][1000 genomes]
rs729543	1.00[AMR][1000 genomes]
rs73450690	1.00[AMR][1000 genomes]
rs74045761	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74045762	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74045954	1.00[AMR][1000 genomes]
rs74046203	1.00[AMR][1000 genomes]
rs74046204	1.00[AMR][1000 genomes]
rs74046207	1.00[AMR][1000 genomes]
rs74046209	1.00[AMR][1000 genomes]
rs959089	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv899994	chr13:37816086-38087145	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1038850	chr13:37820489-38209571	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv34109	chr13:37843819-38276391	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv832582	chr13:37943056-38124252	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1045716	chr13:37952062-38394595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	esv3376232	chr13:38003869-38004080	Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38003200-38005200	Enhancers	NHDF-Ad	bronchial
2	chr13:38003400-38004000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr13:38003400-38004200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr13:38003400-38005000	Enhancers	NHLF	lung
5	chr13:38003400-38006200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr13:38003600-38004600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr13:38003800-38004200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr13:38003800-38004800	Enhancers	Osteobl	bone
9	chr13:38003800-38005200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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