Variant report

Variant	rs35211425
Chromosome Location	chr5:150960306-150960307
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:150958636..150961292-chr5:150962210..150963817,2	K562	blood:
2	chr5:150949470..150952211-chr5:150958873..150961683,3	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10044120	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10054406	0.87[ASN][1000 genomes]
rs10069540	0.87[ASN][1000 genomes]
rs10069901	0.87[ASN][1000 genomes]
rs10071034	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10072841	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10074454	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10079712	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10085060	0.88[ASN][1000 genomes]
rs11746958	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11750312	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13158643	0.87[ASN][1000 genomes]
rs13166858	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13167092	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13187324	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1432862	0.89[ASN][1000 genomes]
rs1432866	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1541909	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1541910	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1835944	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2163769	0.89[ASN][1000 genomes]
rs2304054	0.87[ASN][1000 genomes]
rs28449749	0.87[ASN][1000 genomes]
rs34335300	0.87[ASN][1000 genomes]
rs34346367	0.87[ASN][1000 genomes]
rs35568803	0.84[EUR][1000 genomes]
rs35908499	0.87[ASN][1000 genomes]
rs35957412	0.87[ASN][1000 genomes]
rs3734055	0.88[ASN][1000 genomes]
rs3734057	0.88[ASN][1000 genomes]
rs3734058	0.83[ASN][1000 genomes]
rs3734059	0.89[ASN][1000 genomes]
rs3734060	0.88[ASN][1000 genomes]
rs4314387	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4320248	0.88[ASN][1000 genomes]
rs4376256	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4416593	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4416594	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4416595	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4452546	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6859217	0.88[ASN][1000 genomes]
rs6878528	0.88[ASN][1000 genomes]
rs6878532	0.88[ASN][1000 genomes]
rs6878556	0.88[ASN][1000 genomes]
rs6878627	0.88[ASN][1000 genomes]
rs6879740	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6880902	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6883153	0.88[ASN][1000 genomes]
rs6883216	0.88[ASN][1000 genomes]
rs7709576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7710596	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7719117	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7724472	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7726769	0.88[ASN][1000 genomes]
rs7727173	0.88[ASN][1000 genomes]
rs7730502	0.84[EUR][1000 genomes]
rs7732813	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7737011	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7737419	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9324698	0.88[ASN][1000 genomes]
rs9324699	0.86[ASN][1000 genomes]
rs9324700	0.89[ASN][1000 genomes]
rs9918229	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9918283	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:150951200-150960400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:150951600-150960400	Genic enhancers	NHEK	skin
3	chr5:150957200-150960400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:150958000-150960800	Weak transcription	Fetal Thymus	thymus
5	chr5:150959400-150965600	Weak transcription	Pancreas	Pancrea
6	chr5:150959600-150960800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:150959600-150961200	Genic enhancers	HMEC	breast
8	chr5:150959600-150962000	Enhancers	Placenta	Placenta
9	chr5:150959600-150967400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr5:150959800-150960600	Enhancers	Adipose Nuclei	Adipose
11	chr5:150960000-150961600	Enhancers	Esophagus	oesophagus
12	chr5:150960000-150962000	Enhancers	Fetal Muscle Leg	muscle
13	chr5:150960000-150962600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:150960200-150961400	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin

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