Variant report

Variant	rs6879740
Chromosome Location	chr5:150961495-150961496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:150957894..150960136-chr5:150961110..150963817,2	K562	blood:
2	chr5:150949470..150952211-chr5:150958873..150961683,3	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10044120	0.96[CEU][hapmap];0.90[CHB][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10052817	0.86[ASN][1000 genomes]
rs10060613	0.86[ASN][1000 genomes]
rs10060662	0.88[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs10071034	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10072841	0.96[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10074454	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10079712	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11746958	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11750312	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12055366	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs13166858	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13167092	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13187324	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1432862	0.83[CHB][hapmap]
rs1432866	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1541909	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1541910	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1835944	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2304053	0.83[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs35211425	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3734058	0.83[CHB][hapmap]
rs3734059	0.83[CHB][hapmap]
rs3734060	0.83[CHB][hapmap]
rs4314387	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4376256	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4416593	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4416594	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4416595	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4452546	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6880902	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7709576	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7710596	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7719117	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7724472	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7732813	0.87[EUR][1000 genomes]
rs7737011	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7737419	0.91[CEU][hapmap];0.83[CHB][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9324700	0.83[CHB][hapmap]
rs9918229	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9918283	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:150959400-150965600	Weak transcription	Pancreas	Pancrea
2	chr5:150959600-150962000	Enhancers	Placenta	Placenta
3	chr5:150959600-150967400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr5:150960000-150961600	Enhancers	Esophagus	oesophagus
5	chr5:150960000-150962000	Enhancers	Fetal Muscle Leg	muscle
6	chr5:150960000-150962600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:150960400-150961800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr5:150960600-150961800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:150960600-150961800	Enhancers	Fetal Muscle Trunk	muscle
10	chr5:150960600-150962000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr5:150960600-150962000	Enhancers	Colon Smooth Muscle	Colon
12	chr5:150960600-150962400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr5:150960600-150965600	Weak transcription	Adipose Nuclei	Adipose
14	chr5:150960800-150961800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:150960800-150962000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr5:150961000-150962000	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr5:150961000-150962400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr5:150961000-150962600	Flanking Active TSS	NHEK	skin
19	chr5:150961200-150961800	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr5:150961200-150962000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr5:150961200-150962000	Flanking Active TSS	HMEC	breast
22	chr5:150961400-150961600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr5:150961400-150961800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr5:150961400-150961800	Enhancers	Fetal Brain Female	brain
25	chr5:150961400-150962000	Enhancers	H1 Cell Line	embryonic stem cell
26	chr5:150961400-150962000	Weak transcription	Fetal Thymus	thymus

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